hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21080320/chunk_1/iprscan-20080810-21080320.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj23122
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                 358.6   3.9e-103   6
SM00225                                                 110.0    2.6e-28   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      58   155 ..     1   114 []   110.0  2.6e-28
SM00612      1/6     306   352 ..     1    55 []    54.9    1e-11
SM00612      2/6     353   399 ..     1    55 []    70.0    3e-16
SM00612      3/6     400   446 ..     1    55 []    57.8  1.4e-12
SM00612      4/6     447   493 ..     1    55 []    72.8  4.1e-17
SM00612      5/6     494   546 ..     1    55 []    42.4  5.8e-08
SM00612      6/6     547   593 .]     1    55 []    60.6    2e-13

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 58 to 155: score 110.0, E = 2.6e-28
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+lv+g+         ++++a  H++vL++    S+yF a+f+++
     fj23122    58    CDVILVAGD---------RRIPA--HRLVLSSV---SDYFAAMFTNd 90   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++ ++++i +++      v p ++  l+++ Yt++l+l+e+   n+e l
     fj23122    91 vrearqeeIKMEG------VEPNSLWSLIQYAYTgRLELKED---NIECL 131  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L +A +l    q+ ++ve+C++fl k+l   
     fj23122   132 LSTACLL----QLSqVVEACCKFLMKQL    155  

SM00612: domain 1 of 6, from 306 to 352: score 54.9, E = 1e-11
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       +++vGG+d         +    s+E+YD++tn W+pv++M+ +R  
     fj23122   306    TLFAVGGMDS--------TKGATSIEKYDLRTNMWTPVANMNGRRLQ 344  

                   agvaving<-*
                   +gvav+++   
     fj23122   345 FGVAVLDD    352  

SM00612: domain 2 of 6, from 353 to 399: score 70.0, E = 3e-16
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+YvvGG+dg          +l++vE+Y+p+t++W+++p+M+t R g
     fj23122   353    KLYVVGGRDGL--------KTLNTVECYNPKTKTWSVMPPMSTHRHG 391  

                   agvaving<-*
                    gvav++g   
     fj23122   392 LGVAVLEG    399  

SM00612: domain 3 of 6, from 400 to 446: score 57.8, E = 1.4e-12
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                        Y+vGG+dg        +++l++vE++Dp   +W  v+ M+tpRs 
     fj23122   400    PMYAVGGHDG--------WSYLNTVERWDPQARQWNFVATMSTPRST 438  

                   agvaving<-*
                   +gvav+ g   
     fj23122   439 VGVAVLSG    446  

SM00612: domain 4 of 6, from 447 to 493: score 72.8, E = 4.1e-17
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+Y+vGG+dg        +++lksvE++Dp+tnkW+ ++ M+ +R g
     fj23122   447    KLYAVGGRDG--------SSCLKSVECFDPHTNKWTLCAQMSKRRGG 485  

                   agvaving<-*
                   +gv++ ng   
     fj23122   486 VGVTTWNG    493  

SM00612: domain 5 of 6, from 494 to 546: score 42.4, E = 5.8e-08
                   *->kiYvvGGfdgttrclpgegqrlks.....vEvYDpetnkWrpvpsMp
                      ++Y++GG+d        +++ l s+ ++ vE+YDp+t+ W+ v+sM+
     fj23122   494    LLYAIGGHDA-------PASNLTSrlsdcVERYDPKTDMWTAVASMS 533  

                   tpRsgagvaving<-*
                     R  +gv+ +++   
     fj23122   534 ISRDAVGVCLLGD    546  

SM00612: domain 6 of 6, from 547 to 593: score 60.6, E = 2e-13
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      k+Y+vGG+dg        + +l++vE YDp tn+W++v+++  +R+g
     fj23122   547    KLYAVGGYDG--------QAYLNTVEAYDPQTNEWTQVAPLCLGRAG 585  

                   agvaving<-*
                   a+v++++    
     fj23122   586 ACVVTVKL    593  

//