hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-17055004/chunk_1/iprscan-20090630-17055004.nocrc
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Query sequence: fk00014s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          87.2    4.7e-23   6
PF00096.16.fs Zinc finger, C2H2 type                          75.4    1.7e-19   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   2/6     200   223 ..     1    24 []    19.5    0.011
PF00096.16.fs   3/5     290   313 ..     1    24 []    24.1  9.6e-05
PF00096.16.ls   4/6     290   313 ..     1    24 []    26.0  0.00012
PF00096.16.ls   6/6     443   466 ..     1    24 []    21.5   0.0028

Alignments of top-scoring domains:
PF00096.16.ls: domain 2 of 6, from 200 to 223: score 19.5, E = 0.011
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+ +Cgk  ++ + +k H + +H   
   fk00014s1   200    FTCH-HCGKQLRSLAGMKYHVMAnH    223  

PF00096.16.fs: domain 3 of 5, from 290 to 313: score 24.1, E = 9.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       kC+ +Cgk +++k+ L  Hlr++H   
   fk00014s1   290    LKCH-HCGKPYRSKAGLAYHLRSeH    313  

PF00096.16.ls: domain 4 of 6, from 290 to 313: score 26.0, E = 0.00012
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       kC+ +Cgk +++k+ L  Hlr++H   
   fk00014s1   290    LKCH-HCGKPYRSKAGLAYHLRSeH    313  

PF00096.16.ls: domain 6 of 6, from 443 to 466: score 21.5, E = 0.0028
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC   C+k F + s  k H+++ H   
   fk00014s1   443    YKCL-LCQKEFVSESGVKYHINSvH    466  

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