hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-17055004/chunk_1/iprscan-20090630-17055004.nocrc
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Query sequence: fk00014s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  74.7    1.1e-17   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/4     200   223 ..     1    23 []    21.5     0.12
SM00355      2/4     290   313 ..     1    23 []    24.6    0.013
SM00355      3/4     409   431 ..     1    23 []     5.0       87
SM00355      4/4     443   466 ..     1    23 []    23.6    0.027

Alignments of top-scoring domains:
SM00355: domain 1 of 4, from 200 to 223: score 21.5, E = 0.12
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ Cgk+ +s   +k H++  H   
   fk00014s1   200    FTCHH-CGKQLRSLaGMKYHVMaNH    223  

SM00355: domain 2 of 4, from 290 to 313: score 24.6, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ Cgk ++sk  L  H+r+ H   
   fk00014s1   290    LKCHH-CGKPYRSKaGLAYHLRsEH    313  

SM00355: domain 3 of 4, from 409 to 431: score 5.0, E = 87
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                       +Cp +gC  ++ss + Lk H+      
   fk00014s1   409    IQCPNqGCEAVYSSVsGLKAHLG--    431  

SM00355: domain 4 of 4, from 443 to 466: score 23.6, E = 0.027
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC + C+k f s++  k H+ +vH   
   fk00014s1   443    YKCLL-CQKEFVSEsGVKYHINsVH    466  

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