hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10420743/chunk_1/iprscan-20090618-10420743.nocrc
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Query sequence: fk00023
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02825.10.ls WWE domain                                     245.1    1.4e-70   2
PF02825.10.fs WWE domain                                     241.3    1.9e-69   2
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           20.4    7.5e-07   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           22.3    0.00071   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02825.10.fs   1/2      68   147 ..     1    89 []   123.0  1.2e-34
PF02825.10.ls   1/2      68   147 ..     1    89 []   124.9  2.1e-34
PF02825.10.fs   2/2     148   224 ..     1    89 []   118.3  2.7e-33
PF02825.10.ls   2/2     148   224 ..     1    89 []   120.1  5.7e-33
PF00097.15.fs   1/1     464   524 ..     1    50 []    20.4  7.5e-07
PF00097.15.ls   1/1     464   524 ..     1    50 []    22.3  0.00071

Alignments of top-scoring domains:
PF02825.10.fs: domain 1 of 2, from 68 to 147: score 123.0, E = 1.2e-34
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      +++pp+nva+  vvvWe+    +++ +WrpY   v+++IEn+++++ 
     fk00023    68    LGFPPQNVAR--VVVWEWL---NEHSRWRPYTATVCHHIENVLKEDA 109  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +GsV+l+qv + +++pY+id+++m+Q+r++tg   t+R+VrR   
     fk00023   110 RGSVVLGQV-DAQLVPYIIDLQSMHQFRQDTG---TMRPVRR    147  

PF02825.10.ls: domain 1 of 2, from 68 to 147: score 124.9, E = 2.1e-34
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      +++pp+nva+  vvvWe+    +++ +WrpY   v+++IEn+++++ 
     fk00023    68    LGFPPQNVAR--VVVWEWL---NEHSRWRPYTATVCHHIENVLKEDA 109  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +GsV+l+qv + +++pY+id+++m+Q+r++tg   t+R+VrR   
     fk00023   110 RGSVVLGQV-DAQLVPYIIDLQSMHQFRQDTG---TMRPVRR    147  

PF02825.10.fs: domain 2 of 2, from 148 to 224: score 118.3, E = 2.7e-33
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      ++++ps+++g k++vWe+e   +d+g W++Y++ ++++I+nay++++
     fk00023   148    NFYDPSSAPG-KGIVWEWE---NDGGAWTAYDMDICITIQNAYEKQH 190  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +   +l+ + s+ G++Y+i+fn+m Q++++t+   ++R+ rR   
     fk00023   191 P---WLD-L-SSLGFCYLIYFNSMSQMNRQTR---RRRRLRR    224  

PF02825.10.ls: domain 2 of 2, from 148 to 224: score 120.1, E = 5.7e-33
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      ++++ps+++g k++vWe+e   +d+g W++Y++ ++++I+nay++++
     fk00023   148    NFYDPSSAPG-KGIVWEWE---NDGGAWTAYDMDICITIQNAYEKQH 190  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +   +l+ + s+ G++Y+i+fn+m Q++++t+   ++R+ rR   
     fk00023   191 P---WLD-L-SSLGFCYLIYFNSMSQMNRQTR---RRRRLRR    224  

PF00097.15.fs: domain 1 of 1, from 464 to 524: score 20.4, E = 7.5e-07
                   *->CrICleelkepsnd.............fplilpCgHsGslkyfCrsC
                      C IC+e l ++s +++  ++++ +++ +  +  CgH      ++  C
     fk00023   464    CTICMERLVTASGYegvlrhkgvrpelVGRLGRCGHM-----YHLLC 505  

                   lerwlss...sgnttCplC<-*
                   l+ ++s+++++g+ +Cp C   
     fk00023   506 LVAMYSNgnkDGSLQCPTC    524  

PF00097.15.ls: domain 1 of 1, from 464 to 524: score 22.3, E = 0.00071
                   *->CrICleelkepsnd.............fplilpCgHsGslkyfCrsC
                      C IC+e l ++s +++  ++++ +++ +  +  CgH      ++  C
     fk00023   464    CTICMERLVTASGYegvlrhkgvrpelVGRLGRCGHM-----YHLLC 505  

                   lerwlss...sgnttCplC<-*
                   l+ ++s+++++g+ +Cp C   
     fk00023   506 LVAMYSNgnkDGSLQCPTC    524  

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