hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10420743/chunk_1/iprscan-20090618-10420743.nocrc
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Query sequence: fk00023
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00678                                                 270.0    1.8e-76   2
SM00184                                                  34.8    1.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00678    1/2      76   155 ..     1    84 []   144.1  1.5e-38
SM00678    2/2     157   232 ..     1    84 []   125.9  4.3e-33
SM00184    1/1     464   524 ..     1    23 []    34.8  1.2e-05

Alignments of top-scoring domains:
SM00678: domain 1 of 2, from 76 to 155: score 144.1, E = 1.5e-38
                   *->gkkvvWeyesrshggWwpYdprvskhIEdafargkktcelsilGqvD
                      +++vvWe++++ h++W+pY ++v++hIE++ +  +++ ++++lGqvD
     fk00023    76    ARVVVWEWLNE-HSRWRPYTATVCHHIENVLK--EDARGSVVLGQVD 119  

                   .sLrpYiiDfesmtQyrqdtgnrTtRkVrRvladpysa<-*
                    +L+pYiiD++sm+Q+rqdtg  T+R+VrR+++dp+sa   
     fk00023   120 aQLVPYIIDLQSMHQFRQDTG--TMRPVRRNFYDPSSA    155  

SM00678: domain 2 of 2, from 157 to 232: score 125.9, E = 4.3e-33
                   *->gkkvvWeyesrshggWwpYdprvskhIEdafargkktcelsilGqvD
                      gk++vWe+e++ +g+W++Yd++++++I++a+++++++++ls lG   
     fk00023   157    GKGIVWEWEND-GGAWTAYDMDICITIQNAYEKQHPWLDLSSLG--- 199  

                   sLrpYiiDfesmtQyrqdtgnrTtRkVrRvladpysa<-*
                     ++Y+i+f+sm+Q++++t+ r +R+ rR+l+ +y++   
     fk00023   200 --FCYLIYFNSMSQMNRQTR-R-RRRLRRRLDLAYPL    232  

SM00184: domain 1 of 1, from 464 to 524: score 34.8, E = 1.2e-05
                   *->CpICle......................pvvlpCgH.FCr.Ci....
                      C+IC+e+  + ++ ++  ++++ +++   ++  CgH ++  C+    
     fk00023   464    CTICMErlvtasgyegvlrhkgvrpelvGRLGRCGHmYHLlCLvamy 510  

                   ..........CPlC<-*
                   ++++++++ +CP+C   
     fk00023   511 sngnkdgslqCPTC    524  

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