hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-21253439/chunk_1/iprscan-20080810-21253439.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk00046 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00012.10.ls Hsp70 protein 1378.9 0 1 PF00012.10.fs Hsp70 protein 1377.0 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00012.10.fs 1/1 82 680 .. 1 618 [] 1377.0 0 PF00012.10.ls 1/1 82 680 .. 1 618 [] 1378.9 0 Alignments of top-scoring domains: PF00012.10.fs: domain 1 of 1, from 82 to 680: score 1377.0, E = 0 *->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGErLV v+GIDLGTTNScVAVmeg++++v++NaeG+RtTPSvVAFt +GErLV fk00046 82 VVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLV 128 GqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsngd G++AKrQavtNp+NT++++KRlIGRr+ddpeVq+dik+vP+k+v++sngd fk00046 129 GMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGD 178 awveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPAYF awve++ Gk ++P++I+A+vL+K+KetAE+yLG++ ++AVITVPAYF fk00046 179 AWVEAH--GK--LYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYF 224 NDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernIl ND+QRQATKDAG+I GLnVlR+iNEPTAAALAYGLDK + +++I+ fk00046 225 NDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSE------DKVIA 268 VfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlveeFk V+DLGGGTFD+SiLei++GVFEVk+TnGDT+LGGeDFD++l++h+v+eFk fk00046 269 VYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFK 318 kkegiDlskdkrAlqRLreaAEKAKieLSsssqteinLpfitadadGPkh +++g+Dl+kd++AlqR reaAEKAK+eLSss qt+inLp+ t+d +GPkh fk00046 319 RETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDSSGPKH 368 lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGsTR l+++LtRA+FE +v dL++Rt+ P++ka +DA++sksdI eV+LVGG+TR fk00046 369 LNMKLTRAQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTR 418 IPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGVLsGseeVkDvlLL +P+Vq++V+++FG + Psk VNPDEAVAiGAA+Q+GVL+G +V+DvlLL fk00046 419 MPKVQQTVQDLFG-RAPSKAVNPDEAVAIGAAIQGGVLAG--DVTDVLLL 465 DVtPLSLGIETlGGvmtklIeRNTTIPtkkSqiFSTaaDNQtaVeIqVlq DVtPLSLGIETlGGv+tklI+RNTTIPtkkSq+FSTaaD+Qt+VeI+V q fk00046 466 DVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQ 515 GERelakDNklLGqFeLdGIpPAPrGvPQIeVtFdIDANGIlnVsAkDkg GERe+a DNklLGqF+L GIpPAPrGvPQIeVtFdIDANGI++VsAkDkg fk00046 516 GEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKG 565 tgkeqkItItassgrLsddEIerMvkdAEkyaeeDkkrkeriEakNeaEs tg eq+I I++s+g Ls+d+Ie Mvk AEkyaeeD+ +ker+Ea N aE fk00046 566 TGREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEG 614 lvystekslkeeklgdkvseadkeklkkveeaiewLkealegeddAekee ++++te++++e +d+++++++ k++e i + +e l+ +d + e fk00046 615 IIHDTETKMEEF--KDQLPADEC---NKLKEEISKMRELLARKDSETGEN 659 ikakteeLqkvvqkigekmyq<-* i+++ + Lq+++ k++e++y+ fk00046 660 IRQAASSLQQASLKLFEMAYK 680 PF00012.10.ls: domain 1 of 1, from 82 to 680: score 1378.9, E = 0 *->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGErLV v+GIDLGTTNScVAVmeg++++v++NaeG+RtTPSvVAFt +GErLV fk00046 82 VVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLV 128 GqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsngd G++AKrQavtNp+NT++++KRlIGRr+ddpeVq+dik+vP+k+v++sngd fk00046 129 GMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGD 178 awveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPAYF awve++ Gk ++P++I+A+vL+K+KetAE+yLG++ ++AVITVPAYF fk00046 179 AWVEAH--GK--LYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYF 224 NDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernIl ND+QRQATKDAG+I GLnVlR+iNEPTAAALAYGLDK + +++I+ fk00046 225 NDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSE------DKVIA 268 VfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlveeFk V+DLGGGTFD+SiLei++GVFEVk+TnGDT+LGGeDFD++l++h+v+eFk fk00046 269 VYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFK 318 kkegiDlskdkrAlqRLreaAEKAKieLSsssqteinLpfitadadGPkh +++g+Dl+kd++AlqR reaAEKAK+eLSss qt+inLp+ t+d +GPkh fk00046 319 RETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDSSGPKH 368 lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGsTR l+++LtRA+FE +v dL++Rt+ P++ka +DA++sksdI eV+LVGG+TR fk00046 369 LNMKLTRAQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTR 418 IPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGVLsGseeVkDvlLL +P+Vq++V+++FG + Psk VNPDEAVAiGAA+Q+GVL+G +V+DvlLL fk00046 419 MPKVQQTVQDLFG-RAPSKAVNPDEAVAIGAAIQGGVLAG--DVTDVLLL 465 DVtPLSLGIETlGGvmtklIeRNTTIPtkkSqiFSTaaDNQtaVeIqVlq DVtPLSLGIETlGGv+tklI+RNTTIPtkkSq+FSTaaD+Qt+VeI+V q fk00046 466 DVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQ 515 GERelakDNklLGqFeLdGIpPAPrGvPQIeVtFdIDANGIlnVsAkDkg GERe+a DNklLGqF+L GIpPAPrGvPQIeVtFdIDANGI++VsAkDkg fk00046 516 GEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKG 565 tgkeqkItItassgrLsddEIerMvkdAEkyaeeDkkrkeriEakNeaEs tg eq+I I++s+g Ls+d+Ie Mvk AEkyaeeD+ +ker+Ea N aE fk00046 566 TGREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEG 614 lvystekslkeeklgdkvseadkeklkkveeaiewLkealegeddAekee ++++te++++e +d+++++++ k++e i + +e l+ +d + e fk00046 615 IIHDTETKMEEF--KDQLPADEC---NKLKEEISKMRELLARKDSETGEN 659 ikakteeLqkvvqkigekmyq<-* i+++ + Lq+++ k++e++y+ fk00046 660 IRQAASSLQQASLKLFEMAYK 680 //