hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21253439/chunk_1/iprscan-20080810-21253439.nocrc
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Query sequence: fk00046
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR02350 prok_dnaK: chaperone protein DnaK            1336.1          0   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR02350   1/1      81   680 ..     1   598 []  1336.1        0

Alignments of top-scoring domains:
TIGR02350: domain 1 of 1, from 81 to 680: score 1336.1, E = 0
                   *->KiiGIDLGTTNScvAVmeGGePvVIpNaEGaRTTPSvVAFtknGerL
                       ++GIDLGTTNScvAVmeG +++V++NaEGaRTTPSvVAFt +GerL
     fk00046    81    AVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERL 127  

                   VGqpAKRQAvtNPenTiySiKRfmGrkfk..evkeeakrvPYkvvegdng
                   VG pAKRQAvtNP nT+y+ KR++Gr+++++ev++++k+vP+k+v+++ng
     fk00046   128 VGMPAKRQAVTNPNNTFYATKRLIGRRYDdpEVQKDIKNVPFKIVRASNG 177  

                   dvrvevrgKeytPqEISAmiLqKLKkdAEayLGekVteAVITVPAYFNDa
                   d++ve +gK y+P +I+A++L+K+K++AE yLG + + AVITVPAYFND+
     fk00046   178 DAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDS 227  

                   QRqATKDAGkIAGLeVlRIINEPTAAALAYGLDKkkdekIlVfDLGGGTF
                   QRqATKDAG+I GL+VlR+INEPTAAALAYGLDK++d++I+V+DLGGGTF
     fk00046   228 QRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSEDKVIAVYDLGGGTF 277  

                   DVSILEiGDGvfeVksTaGDthLGGDDFDerIidwLadeFkkeeqGIDLs
                   D+SILEi  GvfeVksT+GDt+LGG+DFD++ + ++++eFk e+ G+DL 
     fk00046   278 DISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRET-GVDLT 326  

                   kDkmALQRLkEAAEKAKiELSsvteTeInLPFITadasGPkHLeltLtRA
                   kD+mALQR++EAAEKAK+ELSs+ +T+InLP++T+d+sGPkHL+++LtRA
     fk00046   327 KDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDSSGPKHLNMKLTRA 376  

                   kFEeLtadLvertkePvrqALkDAglsasdIdeViLVGGsTRiPaVqelV
                   +FE ++ dL++rt+ P+++A++DA +s+sdI eViLVGG+TR+P+Vq++V
     fk00046   377 QFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTV 426  

                   keffGKepnksVNPDEvVAiGAAIQGGVLkGdeVkDVLLLDVTPLSLGIE
                   +++fG+ p k VNPDE+VAiGAAIQGGVL+Gd V+DVLLLDVTPLSLGIE
     fk00046   427 QDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGD-VTDVLLLDVTPLSLGIE 475  

                   TlGGVmTkLIeRNTTIPtkKSQvFSTAaDNQpaVeIhVlQGERpmAaDNk
                   TlGGV+TkLI RNTTIPtkKSQvFSTAaD+Q+ VeI V+QGER+mA DNk
     fk00046   476 TLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNK 525  

                   sLGrFeLtGIpPAPRGvPQIEVTFDIDANGIlhVsAKDkaTGKeqsItIt
                    LG+F+L GIpPAPRGvPQIEVTFDIDANGI+hVsAKDk+TG+eq+I I+
     fk00046   526 LLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQ 575  

                   assgLseeEIerMvkeAEanaeeDkkrkEevearNeaDsliyqaektLke
                   +s+gLs+++Ie Mvk AE++aeeD+++kE+vea N a+++i+ +e  ++e
     fk00046   576 SSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKMEE 625  

                   agdklpaeekekiekavaelkealkgedveek..ikakteeLqkalqkla
                   ++d+lpa+e  k++++++ ++e+l ++d e  ++i+++   Lq+a+ kl 
     fk00046   626 FKDQLPADECNKLKEEISKMRELLARKDSETGenIRQAASSLQQASLKLF 675  

                   ealya<-*
                   e +y+   
     fk00046   676 EMAYK    680  

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