hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21313921/chunk_1/iprscan-20080810-21313921.nocrc
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Query sequence: fk00081
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF03712.5.fs   Copper type II ascorbate-dependent mon    80.5    9.7e-24   1
PF03712.5.ls   Copper type II ascorbate-dependent mon    77.1      5e-20   1
PF01082.10.fs  Copper type II ascorbate-dependent mon    40.0    7.4e-12   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01082.10.fs    1/1       3    53 ..   101   152 .]    40.0  7.4e-12
PF03712.5.fs     1/1      68   217 ..     1   152 [.    80.5  9.7e-24
PF03712.5.ls     1/1      68   232 ..     1   173 []    77.1    5e-20

Alignments of top-scoring domains:
PF01082.10.fs: domain 1 of 1, from 3 to 53: score 40.0, E = 7.4e-12
                   *->scskILyAWArnApptvLPkeVGlriGgkgsikYLVLQVHYghapsf
                      +c+++++AWA +   + +P+ VGl++G + +  Y+ L+VHY ++p  
     fk00081     3    TCETVIFAWAIGGEGFSYPPHVGLSLGTPLDPHYVLLEVHY-DNPTY 48   

                   qdgek<-*
                   ++g +   
     fk00081    49 EEGLI    53   

PF03712.5.fs: domain 1 of 1, from 68 to 217: score 80.5, E = 9.7e-24
                   *->kfvAGImglyLlmspdfaIPpgetafnldisCkynetksALP...es
                      k++AG+ + +L  s    IPpg   f +++ C+  +   AL  +++s
     fk00081    68    KYDAGVIEAGLWVSLFHTIPPGMPEFQSEGHCTLECLEEALEaekPS 114  

                   GIhpFAYRvHaHgLGrVvtGyrvRtnsDGngkwheIGkgdPqyPPHfQaF
                   GIh+FA  +HaH+ Gr +    +R      gk+  +   d      fQ+F
     fk00081   115 GIHVFAVLLHAHLAGRGIRLRHFR-----KGKEMKLLAYDDDFDFNFQEF 159  

                   YpvknvveVkpGDiLAtrCtYdttkrtkaTsiGaTinDEMCNfYiMYYtd
                   + +k   ++ pGD L+t C Y+t++r++ T +G     EMC  Y+ YY+ 
     fk00081   160 QYLKEEQTILPGDNLITECRYNTKDRAEMTWGGLSTRSEMCLSYLLYYPR 209  

                   ssvelpys<-*
                     ++ + s   
     fk00081   210 INLTRCAS    217  

PF03712.5.ls: domain 1 of 1, from 68 to 232: score 77.1, E = 5e-20
                   *->kfvAGImglyLlmspdfaIPpgetafnldisCkynetksALP...es
                      k++AG+ + +L  s    IPpg   f +++ C+  +   AL  +++s
     fk00081    68    KYDAGVIEAGLWVSLFHTIPPGMPEFQSEGHCTLECLEEALEaekPS 114  

                   GIhpFAYRvHaHgLGrVvtGyrvRtnsDGngkwheIGkgdPqyPPHfQaF
                   GIh+FA  +HaH+ Gr +    +R      gk+  +   d      fQ+F
     fk00081   115 GIHVFAVLLHAHLAGRGIRLRHFR-----KGKEMKLLAYDDDFDFNFQEF 159  

                   YpvknvveVkpGDiLAtrCtYdttkrtkaTsiGaTinDEMCNfYiMYYtd
                   + +k   ++ pGD L+t C Y+t++r++ T +G     EMC  Y+ YY+ 
     fk00081   160 QYLKEEQTILPGDNLITECRYNTKDRAEMTWGGLSTRSEMCLSYLLYYPR 209  

                   ssvelpysacsgdflpkyFgsnfpsdvsv<-*
                     ++ + s +++  ++  F      +v++   
     fk00081   210 INLTRCAS-IPDIMEQLQF-----IGVKE    232  

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