# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk00095.fasta.nr -Q fk00095.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk00095, 247 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8984169 sequences Expectation_n fit: rho(ln(x))= 5.4619+/-0.000189; mu= 8.3503+/- 0.011 mean_var=93.5964+/-18.323, 0's: 32 Z-trim: 38 B-trim: 111 in 1/65 Lambda= 0.132570 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|6685283|sp|O95832.1|CLD1_HUMAN RecName: Full=Cl ( 211) 1419 280.7 1.5e-73 gi|54697088|gb|AAV38916.1| claudin 1 [synthetic co ( 212) 1419 280.7 1.5e-73 gi|109053876|ref|XP_001093143.1| PREDICTED: simila ( 211) 1414 279.8 2.9e-73 gi|4559278|gb|AAD22962.1|AF115546_1 claudin-1 [Hom ( 211) 1413 279.6 3.3e-73 gi|33150716|gb|AAP97236.1|AF114837_1 claudin-2 [Ho ( 211) 1402 277.5 1.4e-72 gi|149731220|ref|XP_001500138.1| PREDICTED: simila ( 211) 1382 273.6 2e-71 gi|74003604|ref|XP_850248.1| PREDICTED: similar to ( 211) 1377 272.7 3.9e-71 gi|148361387|gb|ABQ59278.1| claudin-1 antigen [Tup ( 211) 1359 269.2 4.2e-70 gi|68052146|sp|Q6L708.1|CLD1_BOVIN RecName: Full=C ( 211) 1358 269.0 4.8e-70 gi|62296502|sp|P56745.2|CLD1_RAT RecName: Full=Cla ( 211) 1326 262.9 3.3e-68 gi|6166481|gb|AAF04850.1| claudin-1 [Rattus norveg ( 211) 1323 262.3 5e-68 gi|38303939|gb|AAH61992.1| Claudin 1 [Rattus norve ( 211) 1322 262.2 5.7e-68 gi|6685278|sp|O88551.1|CLD1_MOUSE RecName: Full=Cl ( 211) 1320 261.8 7.4e-68 gi|156121545|gb|ABU50010.1| claudin 1 [Mus musculu ( 211) 1317 261.2 1.1e-67 gi|126338589|ref|XP_001362641.1| PREDICTED: simila ( 211) 1308 259.5 3.6e-67 gi|227955729|gb|ACP43536.1| claudin 1 [Sus scrofa] ( 211) 1307 259.3 4.1e-67 gi|149411377|ref|XP_001511907.1| PREDICTED: simila ( 211) 1301 258.1 9.2e-67 gi|206596732|emb|CAR58101.1| claudin 1 [Sus scrofa ( 184) 1218 242.2 5e-62 gi|118027154|gb|ABK59974.1| claudin 1 [Oryctolagus ( 202) 1206 240.0 2.6e-61 gi|53127396|emb|CAG31081.1| hypothetical protein [ ( 211) 1140 227.3 1.7e-57 gi|194384650|dbj|BAG59485.1| unnamed protein produ ( 166) 1125 224.4 1e-56 gi|58477321|gb|AAH89635.1| Claudin 1 [Xenopus trop ( 211) 1043 208.8 6.6e-52 gi|27503423|gb|AAH42293.1| MGC53308 protein [Xenop ( 211) 1039 208.0 1.1e-51 gi|109821733|sp|Q3B7N4.1|CLD7_BOVIN RecName: Full= ( 211) 939 188.9 6.4e-46 gi|227121289|gb|ACP19335.1| claudin 7 [Sus scrofa] ( 211) 934 187.9 1.2e-45 gi|126309176|ref|XP_001365324.1| PREDICTED: hypoth ( 211) 926 186.4 3.6e-45 gi|109113067|ref|XP_001107265.1| PREDICTED: claudi ( 211) 926 186.4 3.6e-45 gi|12654455|gb|AAH01055.1| Claudin 7 [Homo sapiens ( 211) 925 186.2 4.1e-45 gi|62297064|sp|O95471.3|CLD7_HUMAN RecName: Full=C ( 211) 925 186.2 4.1e-45 gi|47938322|gb|AAH71844.1| Claudin 7 [Homo sapiens ( 211) 925 186.2 4.1e-45 gi|30583879|gb|AAP36188.1| Homo sapiens claudin 7 ( 212) 925 186.2 4.1e-45 gi|6685292|sp|Q9Z261.1|CLD7_MOUSE RecName: Full=Cl ( 211) 923 185.8 5.3e-45 gi|62296530|sp|Q9Z1L1.2|CLD7_RAT RecName: Full=Cla ( 211) 922 185.7 6.1e-45 gi|73976701|ref|XP_848612.1| PREDICTED: similar to ( 302) 921 185.6 9e-45 gi|114666120|ref|XP_511974.2| PREDICTED: claudin 7 ( 211) 919 185.1 9e-45 gi|73955549|ref|XP_546584.2| PREDICTED: similar to ( 217) 911 183.6 2.7e-44 gi|23867783|dbj|BAC21015.1| claudin7L1 [Xenopus la ( 213) 907 182.8 4.5e-44 gi|154425864|gb|AAI51496.1| CLDN19 protein [Bos ta ( 211) 898 181.1 1.5e-43 gi|49333479|gb|AAT64078.1| claudin 1 [Takifugu rub ( 211) 893 180.1 2.8e-43 gi|227121261|gb|ACP19322.1| claudin 19 [Sus scrofa ( 224) 888 179.2 5.7e-43 gi|33323033|gb|AAQ07256.1|AF497644_1 claudin-19 [H ( 211) 887 179.0 6.3e-43 gi|149693743|ref|XP_001503144.1| PREDICTED: simila ( 224) 883 178.2 1.1e-42 gi|47606757|sp|Q8N6F1.2|CLD19_HUMAN RecName: Full= ( 224) 881 177.8 1.5e-42 gi|158255830|dbj|BAF83886.1| unnamed protein produ ( 211) 878 177.2 2.1e-42 gi|26328533|dbj|BAC28005.1| unnamed protein produc ( 211) 877 177.0 2.4e-42 gi|50926999|gb|AAH79172.1| Claudin 19 [Rattus norv ( 211) 875 176.7 3.1e-42 gi|21755461|dbj|BAC04691.1| unnamed protein produc ( 224) 875 176.7 3.2e-42 gi|47606764|sp|Q9ET38.3|CLD19_MOUSE RecName: Full= ( 224) 870 175.7 6.2e-42 gi|62286467|sp|Q5QT56.1|CLD19_RAT RecName: Full=Cl ( 224) 868 175.4 8.1e-42 gi|126330504|ref|XP_001381636.1| PREDICTED: simila ( 343) 862 174.4 2.5e-41 >>gi|6685283|sp|O95832.1|CLD1_HUMAN RecName: Full=Claudi (211 aa) initn: 1419 init1: 1419 opt: 1419 Z-score: 1477.9 bits: 280.7 E(): 1.5e-73 Smith-Waterman score: 1419; 100.000% identity (100.000% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::::::::::::::::::::: gi|668 MANAGLQLLGFILAFLGWIGAIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|668 V >>gi|54697088|gb|AAV38916.1| claudin 1 [synthetic constr (212 aa) initn: 1419 init1: 1419 opt: 1419 Z-score: 1477.9 bits: 280.7 E(): 1.5e-73 Smith-Waterman score: 1419; 100.000% identity (100.000% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::::::::::::::::::::: gi|546 MANAGLQLLGFILAFLGWIGAIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|546 VL >>gi|109053876|ref|XP_001093143.1| PREDICTED: similar to (211 aa) initn: 1414 init1: 1414 opt: 1414 Z-score: 1472.7 bits: 279.8 E(): 2.9e-73 Smith-Waterman score: 1414; 99.526% identity (100.000% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::::::::::::::::::::: gi|109 MANAGLQLLGFILAFLGWIGAIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|109 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGVIFLLAGLAILVATAWYGNRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|109 V >>gi|4559278|gb|AAD22962.1|AF115546_1 claudin-1 [Homo sa (211 aa) initn: 1413 init1: 1413 opt: 1413 Z-score: 1471.7 bits: 279.6 E(): 3.3e-73 Smith-Waterman score: 1413; 99.052% identity (100.000% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::::::::::::::::::::: gi|455 MANAGLQLLGFILAFLGWIGAIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|455 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQVQCKVFDSLLNLSSTLQATRALMVVGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|455 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILAATAWYGNRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|455 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|455 V >>gi|33150716|gb|AAP97236.1|AF114837_1 claudin-2 [Homo s (211 aa) initn: 1402 init1: 1402 opt: 1402 Z-score: 1460.3 bits: 277.5 E(): 1.4e-72 Smith-Waterman score: 1402; 98.578% identity (99.526% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::::::::::::::::::::: gi|331 MANAGLQLLGFILAFLGWIGAIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL :::::::::::::::::::::::::: .:::::::::::::::::::::::::::::::: gi|331 RIYSYAGDNIVTAQAMYEGLWMSCVSTGTGQIQCKVFDSLLNLSSTLQATRALMVVGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|331 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFFLAGLAILVATAWYGNRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|331 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|331 V >>gi|149731220|ref|XP_001500138.1| PREDICTED: similar to (211 aa) initn: 1382 init1: 1382 opt: 1382 Z-score: 1439.6 bits: 273.6 E(): 2e-71 Smith-Waterman score: 1382; 95.261% identity (100.000% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::::::::::::::::::::: gi|149 MANAGLQLLGFILAFLGWIGAIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL .::::::::::::::.:::::::::::::::::::::::::::::::::::::::.:::: gi|149 KIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVIGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD :.:::::::::::::::.:::::::::::::::.:::.::::.::::::::::::::::: gi|149 GLIAIFVATVGMKCMKCMEDDEVQKMRMAVIGGVIFLFAGLAVLVATAWYGNRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY ::::::::::::.::::::::::::::::.:::::::::::::::::::::::::::::: gi|149 PMTPVNARYEFGHALFTGWAAASLCLLGGGLLCCSCPRKTTSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|149 V >>gi|74003604|ref|XP_850248.1| PREDICTED: similar to Cla (211 aa) initn: 1377 init1: 1377 opt: 1377 Z-score: 1434.5 bits: 272.7 E(): 3.9e-71 Smith-Waterman score: 1377; 93.365% identity (100.000% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::.::::::.:.::::::::: gi|740 MANAGLQLLGFLLAFLGWVGSIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL .::::::::::::::.:::::::::::::::::::::::::::.:::::::::::.:::: gi|740 KIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVIGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD :.:::::::.:::::::.:::::::::::::::.:::.::::.:::::::::::::.::: gi|740 GLIAIFVATIGMKCMKCMEDDEVQKMRMAVIGGVIFLIAGLAVLVATAWYGNRIVQDFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|740 V >>gi|148361387|gb|ABQ59278.1| claudin-1 antigen [Tupaia (211 aa) initn: 1359 init1: 1359 opt: 1359 Z-score: 1415.9 bits: 269.2 E(): 4.2e-70 Smith-Waterman score: 1359; 93.365% identity (99.526% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::::::.:::::::::::::: gi|148 MANAGLQLLGFILAFVGWIGAIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL .::::::::::::::.:::::::::::::::::::::::::::.:::::::::::::::: gi|148 KIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVVGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD :.:::::::.:::::::.::::::::::::.:: :::.:::.::::::::..:::::::: gi|148 GLIAIFVATIGMKCMKCMEDDEVQKMRMAVFGGMIFLIAGLVILVATAWYSHRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|148 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTSSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|148 V >>gi|68052146|sp|Q6L708.1|CLD1_BOVIN RecName: Full=Claud (211 aa) initn: 1358 init1: 1358 opt: 1358 Z-score: 1414.8 bits: 269.0 E(): 4.8e-70 Smith-Waterman score: 1358; 92.891% identity (99.526% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW ::::::::::::::::::::.::::::::: gi|680 MANAGLQLLGFILAFLGWIGSIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL ..::::.::::::::.:::::::::::::::::::::::::::.:::::::::::.:::: gi|680 KVYSYASDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVIGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD :.:::::::::::::::.::::.:::::::.::.:::..::::::::::::::::::::: gi|680 GLIAIFVATVGMKCMKCMEDDEAQKMRMAVFGGVIFLISGLAILVATAWYGNRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|680 PMTPVNARYEFGQALFIGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|680 V >>gi|62296502|sp|P56745.2|CLD1_RAT RecName: Full=Claudin (211 aa) initn: 1326 init1: 1326 opt: 1326 Z-score: 1381.8 bits: 262.9 E(): 3.3e-68 Smith-Waterman score: 1326; 91.469% identity (97.630% similar) in 211 aa overlap (37-247:1-211) 10 20 30 40 50 60 fk0009 ATFGSPGCPPANSPPSAPATPEPARAPERVMANAGLQLLGFILAFLGWIGAIVSTALPQW :::::::::::::: :::::.::::::::: gi|622 MANAGLQLLGFILASLGWIGSIVSTALPQW 10 20 30 70 80 90 100 110 120 fk0009 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL .::::::::::::::.:::::::::::::::::::::::::::.:::::::::::.:::: gi|622 KIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVIGILL 40 50 60 70 80 90 130 140 150 160 170 180 fk0009 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD :.:::::.:.:::::.:::::::::: :::::: ::...::: ::::::::::::::::: gi|622 GLIAIFVSTIGMKCMRCLEDDEVQKMWMAVIGGIIFVISGLATLVATAWYGNRIVQEFYD 100 110 120 130 140 150 190 200 210 220 230 240 fk0009 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDY :::::::::::::::::::::::::::::::: :::::::::::::::::::.::::::: gi|622 PMTPVNARYEFGQALFTGWAAASLCLLGGALLSCSCPRKTTSYPTPRPYPKPTPSSGKDY 160 170 180 190 200 210 fk0009 V : gi|622 V 247 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 10:45:34 2009 done: Thu Jun 18 10:49:11 2009 Total Scan time: 901.230 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]