hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10491207/chunk_1/iprscan-20090618-10491207.nocrc
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Query sequence: fk00095
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00822.11.ls PMP-22/EMP/MP20/Claudin family            314.7    1.5e-91   1
PF00822.11.fs PMP-22/EMP/MP20/Claudin family            312.8    5.7e-91   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00822.11.fs   1/1      40   218 ..     1   188 []   312.8  5.7e-91
PF00822.11.ls   1/1      40   218 ..     1   188 []   314.7  1.5e-91

Alignments of top-scoring domains:
PF00822.11.fs: domain 1 of 1, from 40 to 218: score 312.8, E = 5.7e-91
                   *->mlvlLlgiivlhiawviLLfvsTiPtdqWkvsdyvgdniiTaaaasa
                      ++++Llg+i++ ++w++ ++++++P  qW +++y+gdni+Ta+a+++
     fk00095    40    AGLQLLGFILAFLGWIGAIVSTALP--QWRIYSYAGDNIVTAQAMYE 84   

                   GLWrnCttqsctgqiscksfDsvlelndalqAvqalMilsiRASSilgii
                   GLW++C++qs tgqi+ck+fDs+l+l+++lqA++alM+++i    +lg+i
     fk00095    85 GLWMSCVSQS-TGQIQCKVFDSLLNLSSTLQATRALMVVGI----LLGVI 129  

                   slivfffQlftmkkGgrfklkKarIallaGIiflvsgLcvlvgasiYtsr
                   +++v++ ++++mk++++++++K+r+a+++G+ifl++gL++lv++++Y++r
     fk00095   130 AIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNR 179  

                   iaedfgnpltpYyvnqkYsfGysfiLgWvafalafisGvlY<-*
                   i+++f++p tp  vn++Y+fG+++++gW+a++l++++G l+   
     fk00095   180 IVQEFYDPMTP--VNARYEFGQALFTGWAAASLCLLGGALL    218  

PF00822.11.ls: domain 1 of 1, from 40 to 218: score 314.7, E = 1.5e-91
                   *->mlvlLlgiivlhiawviLLfvsTiPtdqWkvsdyvgdniiTaaaasa
                      ++++Llg+i++ ++w++ ++++++P  qW +++y+gdni+Ta+a+++
     fk00095    40    AGLQLLGFILAFLGWIGAIVSTALP--QWRIYSYAGDNIVTAQAMYE 84   

                   GLWrnCttqsctgqiscksfDsvlelndalqAvqalMilsiRASSilgii
                   GLW++C++qs tgqi+ck+fDs+l+l+++lqA++alM+++i    +lg+i
     fk00095    85 GLWMSCVSQS-TGQIQCKVFDSLLNLSSTLQATRALMVVGI----LLGVI 129  

                   slivfffQlftmkkGgrfklkKarIallaGIiflvsgLcvlvgasiYtsr
                   +++v++ ++++mk++++++++K+r+a+++G+ifl++gL++lv++++Y++r
     fk00095   130 AIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNR 179  

                   iaedfgnpltpYyvnqkYsfGysfiLgWvafalafisGvlY<-*
                   i+++f++p tp  vn++Y+fG+++++gW+a++l++++G l+   
     fk00095   180 IVQEFYDPMTP--VNARYEFGQALFTGWAAASLCLLGGALL    218  

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