hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21373861/chunk_1/iprscan-20080810-21373861.nocrc
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Query sequence: fk00170
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03439.4.ls Supt5 repeat                                   184.9    1.8e-52   2
PF03439.4.fs Supt5 repeat                                   181.0    2.7e-51   2
PF00467.19.ls KOW motif                                      158.8    1.3e-44   6
PF00467.19.fs KOW motif                                      148.0    2.4e-41   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03439.4.ls   1/2     168   217 ..     1    52 []    97.8    3e-26
PF03439.4.fs   1/2     168   217 ..     1    52 []    95.8  1.1e-25
PF03439.4.ls   2/2     253   301 ..     1    52 []    87.1    5e-23
PF03439.4.fs   2/2     253   301 ..     1    52 []    85.2    1e-22
PF00467.19.fs   3/6     501   532 ..     1    40 []    35.8  8.8e-09
PF00467.19.ls   3/6     501   532 ..     1    40 []    37.5  4.2e-08
PF00467.19.ls   5/6     733   766 ..     1    40 []    30.1  7.1e-06
PF00467.19.fs   5/6     733   766 ..     1    40 []    28.3    1e-06

Alignments of top-scoring domains:
PF03439.4.ls: domain 1 of 2, from 168 to 217: score 97.8, E = 3e-26
                   *->eiYveaykqshvkkaieGdvenelydnvtqqlLlPSvkdMPdlwkVk
                      e+Y+++y++s+v ++++G +++el+d++tqq+LlP+vkd P+lw+Vk
     fk00170   168    EYYMKKYAKSSVGETVYG-GSDELSDDITQQQLLPGVKD-PNLWTVK 212  

                   ckige<-*
                   ckige   
     fk00170   213 CKIGE    217  

PF03439.4.fs: domain 1 of 2, from 168 to 217: score 95.8, E = 1.1e-25
                   *->eiYveaykqshvkkaieGdvenelydnvtqqlLlPSvkdMPdlwkVk
                      e+Y+++y++s+v ++++G +++el+d++tqq+LlP+vkd P+lw+Vk
     fk00170   168    EYYMKKYAKSSVGETVYG-GSDELSDDITQQQLLPGVKD-PNLWTVK 212  

                   ckige<-*
                   ckige   
     fk00170   213 CKIGE    217  

PF03439.4.ls: domain 2 of 2, from 253 to 301: score 87.1, E = 5e-23
                   *->eiYveaykqshvkkaieGdvenelydnvtqqlLlPSvkdMPdlwkVk
                      +iYveaykq+hvk+aieG v+n l+ ++++q+++P +k+M+d++kV+
     fk00170   253    YIYVEAYKQTHVKQAIEG-VGN-LRLGYWNQQMVP-IKEMTDVLKVV 296  

                   ckige<-*
                   +++ +   
     fk00170   297 KEVAN    301  

PF03439.4.fs: domain 2 of 2, from 253 to 301: score 85.2, E = 1e-22
                   *->eiYveaykqshvkkaieGdvenelydnvtqqlLlPSvkdMPdlwkVk
                      +iYveaykq+hvk+aieG v+n l+ ++++q+++P +k+M+d++kV+
     fk00170   253    YIYVEAYKQTHVKQAIEG-VGN-LRLGYWNQQMVP-IKEMTDVLKVV 296  

                   ckige<-*
                   +++ +   
     fk00170   297 KEVAN    301  

PF00467.19.fs: domain 3 of 6, from 501 to 532: score 35.8, E = 8.8e-09
                   *->fkkGdvVrVisGpfkGkkGkVvevdpkkGHgslknrVvve<-*
                      fk Gd+V+Vi+G+f G++G +v+v+++         V+++   
     fk00170   501    FKMGDHVKVIAGRFEGDTGLIVRVEENF--------VILF    532  

PF00467.19.ls: domain 3 of 6, from 501 to 532: score 37.5, E = 4.2e-08
                   *->fkkGdvVrVisGpfkGkkGkVvevdpkkGHgslknrVvve<-*
                      fk Gd+V+Vi+G+f G++G +v+v+++         V+++   
     fk00170   501    FKMGDHVKVIAGRFEGDTGLIVRVEENF--------VILF    532  

PF00467.19.ls: domain 5 of 6, from 733 to 766: score 30.1, E = 7.1e-06
                   *->fkkGdvVrVisGpfkGkkGkVvevdpkkGHgslknrVvve<-*
                        +G++Vr+  Gp+kG +G+V++  +++      +rV+++   
     fk00170   733    ELIGQTVRISQGPYKGYIGVVKDATEST------ARVELH    766  

PF00467.19.fs: domain 5 of 6, from 733 to 766: score 28.3, E = 1e-06
                   *->fkkGdvVrVisGpfkGkkGkVvevdpkkGHgslknrVvve<-*
                        +G++Vr+  Gp+kG +G+V++  +++      +rV+++   
     fk00170   733    ELIGQTVRISQGPYKGYIGVVKDATEST------ARVELH    766  

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