hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21373861/chunk_1/iprscan-20080810-21373861.nocrc
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Query sequence: fk00170
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00739                                                 155.3    6.2e-42   6
SM00738                                                  64.1    1.8e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00738    1/1     205   296 ..     1   119 []    64.1  1.8e-14
SM00739    1/6     301   328 ..     1    28 []    15.6      7.3
SM00739    2/6     448   475 ..     1    28 []    28.8  0.00075
SM00739    3/6     500   527 ..     1    28 []    38.8  7.2e-07
SM00739    4/6     622   649 ..     1    28 []    26.6   0.0034
SM00739    5/6     732   759 ..     1    28 []    23.4    0.032
SM00739    6/6    1063  1090 ..     1    28 []    22.1    0.076

Alignments of top-scoring domains:
SM00738: domain 1 of 1, from 205 to 296: score 64.1, E = 1.8e-14
                   *->mkkWYaVqtysGqEkkVaenLerkaealgle....kifeilvPteev
                      +++ + V+++ G+E + a  L+rk  a+++++++ +i ++++P e v
     fk00170   205    DPNLWTVKCKIGEERATAISLMRKFIAYQFTdtplQIKSVVAP-EHV 250  

                   keirkdekwvienGkkkvverklFPGYvfveadmtdevwtlirntpgVtG
                   k                        GY++vea ++ +v+ +i ++ + + 
     fk00170   251 K------------------------GYIYVEAYKQTHVKQAIEGVGNLRL 276  

                   FVgssGkggkPtpvpedEvekilkpe<-*
                     +         +vp++E+ ++lk++   
     fk00170   277 GYWN------QQMVPIKEMTDVLKVV    296  

SM00739: domain 1 of 6, from 301 to 328: score 15.6, E = 7.3
                   *->kfkkGdtVkVisGpfkGktGkvlevdre<-*
                      ++k+  +V+ ++G +k+++++v  v+++   
     fk00170   301    NLKPKSWVRLKRGIYKDDIAQVDYVEPS    328  

SM00739: domain 2 of 6, from 448 to 475: score 28.8, E = 0.00075
                   *->kfkkGdtVkVisGpfkGktGkvlevdre<-*
                      +f++Gd+V+V++G+  +++Gk+l+vd++   
     fk00170   448    NFQPGDNVEVCEGELINLQGKILSVDGN    475  

SM00739: domain 3 of 6, from 500 to 527: score 38.8, E = 7.2e-07
                   *->kfkkGdtVkVisGpfkGktGkvlevdre<-*
                      +fk Gd+VkVi+G+f G+tG +++v+++   
     fk00170   500    YFKMGDHVKVIAGRFEGDTGLIVRVEEN    527  

SM00739: domain 4 of 6, from 622 to 649: score 26.6, E = 0.0034
                   *->kfkkGdtVkVisGpfkGktGkvlevdre<-*
                      ++ + d+VkVi+Gp+ G++G++ +  r+   
     fk00170   622    NIHVKDIVKVIDGPHSGREGEIRHLFRS    649  

SM00739: domain 5 of 6, from 732 to 759: score 23.4, E = 0.032
                   *->kfkkGdtVkVisGpfkGktGkvlevdre<-*
                      +  +G+tV++  Gp+kG +G+v++  ++   
     fk00170   732    NELIGQTVRISQGPYKGYIGVVKDATES    759  

SM00739: domain 6 of 6, from 1063 to 1090: score 22.1, E = 0.076
                   *->kfkkGdtVkVisGpfkGktGkvlevdre<-*
                      ++ k+ +VkVi G+++  tG++l++d+e   
     fk00170  1063    TPTKNNKVKVILGEDREATGVLLSIDGE    1090 

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