hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-21431510/chunk_1/iprscan-20080810-21431510.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk00223 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08344.1.ls Transient receptor ion channel II 147.3 3.9e-41 1 PF08344.1.fs Transient receptor ion channel II 145.3 1.5e-40 1 PF00520.21.ls Ion transport protein 119.7 7.7e-33 1 PF00520.21.fs Ion transport protein 117.8 1.5e-32 1 PF00023.20.fs Ankyrin repeat 26.9 1.6e-06 2 PF00023.20.ls Ankyrin repeat 26.9 6.8e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/2 70 93 .. 1 24 [. 11.9 0.025 PF00023.20.ls 1/2 70 100 .. 1 33 [] 12.6 0.43 PF00023.20.ls 2/2 142 174 .. 1 33 [] 14.2 0.25 PF00023.20.fs 2/2 142 165 .. 1 24 [. 15.0 0.0033 PF08344.1.ls 1/1 177 239 .. 1 63 [] 147.3 3.9e-41 PF08344.1.fs 1/1 177 239 .. 1 63 [] 145.3 1.5e-40 PF00520.21.fs 1/1 406 625 .. 1 224 [] 117.8 1.5e-32 PF00520.21.ls 1/1 406 625 .. 1 224 [] 119.7 7.7e-33 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 2, from 70 to 93: score 11.9, E = 0.025 *->dGfTPLHlAalrgnlevvklLlsq<-* G+++L +A+++ nle+++lLl++ fk00223 70 LGRSALLIAIENENLEIMELLLNH 93 PF00023.20.ls: domain 1 of 2, from 70 to 100: score 12.6, E = 0.43 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+++L +A+++ nle+++lLl+ ++ + d fk00223 70 LGRSALLIAIENENLEIMELLLN--HSVYVGDA 100 PF00023.20.ls: domain 2 of 2, from 142 to 174: score 14.2, E = 0.25 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TP++lAa+ +n+e++klL+++ + fk00223 142 PDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQ 174 PF00023.20.fs: domain 2 of 2, from 142 to 165: score 15.0, E = 0.0033 *->dGfTPLHlAalrgnlevvklLlsq<-* TP++lAa+ +n+e++klL+++ fk00223 142 PDITPIMLAAHTNNYEIIKLLVQK 165 PF08344.1.ls: domain 1 of 1, from 177 to 239: score 147.3, E = 3.9e-41 *->CeCdeCvrsrreDSLrHSrsRINaYRALASpAlisLsseDPiLtAFe C+C eCv+s+++DSLrHSrsR+N+Y+ALASp+li+LsseDPiLtAF fk00223 177 CNCVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFR 223 LSwELrrLAfiEnEFk<-* L wEL++L+++EnEFk fk00223 224 LGWELKELSKVENEFK 239 PF08344.1.fs: domain 1 of 1, from 177 to 239: score 145.3, E = 1.5e-40 *->CeCdeCvrsrreDSLrHSrsRINaYRALASpAlisLsseDPiLtAFe C+C eCv+s+++DSLrHSrsR+N+Y+ALASp+li+LsseDPiLtAF fk00223 177 CNCVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFR 223 LSwELrrLAfiEnEFk<-* L wEL++L+++EnEFk fk00223 224 LGWELKELSKVENEFK 239 PF00520.21.fs: domain 1 of 1, from 406 to 625: score 117.8, E = 1.5e-32 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++ + +++ F++ ++ ++ gf Y++++wN++Df++ fk00223 406 WMILPWVLGFIWGEIKEMWDGGF-------TEYIHDWWNLMDFAMNS 445 pslislilsllgggsegdlyv........res.k.dstlse.gspgllsv ++l+++ l+++ yv+ +++++++e+++ ++tl+ + l+++ fk00223 446 LYLATISLKIVA-------YVkyngsrprEEWeMwHPTLIAeA---LFAI 485 lrllRllRvLRllrlirrapglfRWelrtlWelnslgrslksllnvllll ++l lR l+ l+ + + l++l ++slgr+l ++l++l+++ fk00223 486 SNILSSLR---LISLFTANSH-----LGPL--QISLGRMLLDILKFLFIY 525 llllfiFaiigvqlFggklnkcc.........npingntnFdsfgnaflw +l+l++Fa +++ql+++++++ +++++++++ +++++n+ F++ ++++ + fk00223 526 CLVLLAFANGLNQLYFYYETRAIdepnnckgiRCEKQNNAFSTLFETLQS 575 lFqtmTteGwgdvmpdtl......agtvlgyiyfvsfiilgsflllNLfi lF++ ++ +++t+ + +++++ ++g + f ++++++ ++llN++i fk00223 576 LFWSVFGL---LNLYVTNvkarheFTEFVGATMFGTYNVISLVVLLNMLI 622 avi<-* a++ fk00223 623 AMM 625 PF00520.21.ls: domain 1 of 1, from 406 to 625: score 119.7, E = 7.7e-33 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++ + +++ F++ ++ ++ gf Y++++wN++Df++ fk00223 406 WMILPWVLGFIWGEIKEMWDGGF-------TEYIHDWWNLMDFAMNS 445 pslislilsllgggsegdlyv........res.k.dstlse.gspgllsv ++l+++ l+++ yv+ +++++++e+++ ++tl+ + l+++ fk00223 446 LYLATISLKIVA-------YVkyngsrprEEWeMwHPTLIAeA---LFAI 485 lrllRllRvLRllrlirrapglfRWelrtlWelnslgrslksllnvllll ++l lR l+ l+ + + l++l ++slgr+l ++l++l+++ fk00223 486 SNILSSLR---LISLFTANSH-----LGPL--QISLGRMLLDILKFLFIY 525 llllfiFaiigvqlFggklnkcc.........npingntnFdsfgnaflw +l+l++Fa +++ql+++++++ +++++++++ +++++n+ F++ ++++ + fk00223 526 CLVLLAFANGLNQLYFYYETRAIdepnnckgiRCEKQNNAFSTLFETLQS 575 lFqtmTteGwgdvmpdtl......agtvlgyiyfvsfiilgsflllNLfi lF++ ++ +++t+ + +++++ ++g + f ++++++ ++llN++i fk00223 576 LFWSVFGL---LNLYVTNvkarheFTEFVGATMFGTYNVISLVVLLNMLI 622 avi<-* a++ fk00223 623 AMM 625 //