hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21431510/chunk_1/iprscan-20080810-21431510.nocrc
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Query sequence: fk00223
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00870 trp: transient-receptor-potential calcium ch  1279.2          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00870   1/1      18   723 ..     1   871 []  1279.2        0

Alignments of top-scoring domains:
TIGR00870: domain 1 of 1, from 18 to 723: score 1279.2, E = 0
                   *->RehifttrknrLygkldirkgveaeeielseeekaflpavergdvas
                      R+            +l+i   v+ae+ els+eekafl+ave+gd+a+
     fk00223    18    RI------------PLQI---VRAET-ELSAEEKAFLNAVEKGDYAT 48   

                   vkrkleeaklvyklninwkkgCvdrlgrsaLlsaAieNenleLteLLlnl
                   vk++l+ea+++y++nin    C+d+lgrsaLl +AieNenle++eLLln+
     fk00223    49 VKQALQEAEIYYNVNIN----CMDPLGRSALL-IAIENENLEIMELLLNH 93   

                   srtskylTDSeyqrgevGdaLLhaisleyvdavEailllllkaaresgpl
                   s             ++vGdaLL+ai++e+v+avE++l+++ +++++++p+
     fk00223    94 S-------------VYVGDALLYAIRKEVVGAVELLLSYRRPSGEKQVPT 130  

                   sPlEqELrDDDelandqytseftpgiTaLhLAihrqnyeiVklLLerGAs
                               l++d+++seftp+iT+++LA+h++nyei+klL++++++
     fk00223   131 ------------LMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVT 168  

                   VprPHDarangdefvPEDFKLtNKksqgvdslyhgespLnaaaclaspsi
                   +prPH++r+n++e+v         +s++vdsl+h++s+Ln++++lasps+
     fk00223   169 IPRPHQIRCNCVECV---------SSSEVDSLRHSRSRLNIYKALASPSL 209  

                   vaLlsedPhQPAdiltadsLGNtllhllvmenEFkaEyeelstqmynfal
                   +aL+sedP     ilta++LG++l++l+++enEFkaEyeels+q++ fa+
     fk00223   210 IALSSEDP-----ILTAFRLGWELKELSKVENEFKAEYEELSQQCKLFAK 254  

                   slldklrdskeLEvIlNhqgltPlkLaakegkielfrlkLaIkYkglcrL
                   +lld++r+s+eLE+IlNh+++++ +  +++++++l++lk+aIkY+     
     fk00223   255 DLLDQARSSRELEIILNHRDDHS-EELDPQKYHDLAKLKVAIKYH----- 298  

                   qkKFvawpngqqllslywleeldgwrrkqsvlelivvfviglkfPelsdm
                   qk+Fva+pn+qqll++ w+++++gwrrk++v++l+++++ig++fP+ls++
     fk00223   299 QKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIA 348  

                   yliaPlskLgkfkwKpFikfifhsasylyfLyLliftsvayyrPlktLln
                   yli P+s+Lg+f++KpFikfi+h+asyl+fL++l+++s++++        
     fk00223   349 YLISPRSNLGLFIKKPFIKFICHTASYLTFLFMLLLASQHIV-------- 390  

                   fkenrtdledqifrvrgleqtllemliltwvdglilseekliwlgGvfey
                       rtdl+     v+g+++t++e++il+wv+g+i++e+k++w+gG++ey
     fk00223   391 ----RTDLH-----VQGPPPTVVEWMILPWVLGFIWGEIKEMWDGGFTEY 431  

                   ildlwnildfgmnsfylatfllrpfailfvtqaqayvdiyflvlrehwlp
                   i+d+wn++df+mns+ylat++l+++a+++++            +re+w++
     fk00223   432 IHDWWNLMDFAMNSLYLATISLKIVAYVKYN---------GSRPREEWEM 472  

                   fdptlieeaLfafAlvlSwlnLlYifrgnqhlGPlqimlgrMIlgDilrF
                   ++ptli+eaLfa++++lS+l+L+++f++n+hlGPlqi+lgrM+l Dil+F
     fk00223   473 WHPTLIAEALFAISNILSSLRLISLFTANSHLGPLQISLGRMLL-DILKF 521  

                   lfiYavVLfaFacglnqLyqyydalklnecsNaTtlkphrcdidepekAC
                   lfiY++VL+aFa+glnqLy+yy+++ ++e++   ++k++rc++++     
     fk00223   522 LFIYCLVLLAFANGLNQLYFYYETRAIDEPN---NCKGIRCEKQN----- 563  

                   yignaystlfEtlqeLFwaiiGlvdLvsvnlknehkftefvglllfgaYn
                      na+stlfEtlq+LFw+++Gl++L+++n+k++h+ftefvg+++fg+Yn
     fk00223   564 ---NAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFVGATMFGTYN 610  

                   viaiilLLNMLIAMMgntYqlIaeeaDeeWKfqraklwlsyereggKERL
                   vi++++LLNMLIAMM+n+YqlIa++aD+eWKf+r+klw+sy++egg    
     fk00223   611 VISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGG---- 656  

                   AtlppPfniipspksfvgdrlikliekklgkkrerwcrRveevnwttwer
                    tlppPfniipspksf++  l ++++++++ kr+++ rR++ ++++++er
     fk00223   657 -TLPPPFNIIPSPKSFLY--LGNWFNNTFCPKRDPDGRRRRRNLRSFTER 703  

                   kaetlsedpgncervketlsfteqlvlllryqevmkrlikryVlaeqrpr
                   +a++l+++                    ++yq  +            ++r
     fk00223   704 NADSLIQN--------------------QHYQVKL------------PHR 721  

                   dsdegtteeeikelkqdisSlRfE<-*
                   d                      E   
     fk00223   722 D----------------------E    723  

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