# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk00237.fasta.nr -Q fk00237.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk00237, 750 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6838547 sequences Expectation_n fit: rho(ln(x))= 5.4962+/-0.000191; mu= 12.1786+/- 0.011 mean_var=94.0323+/-17.978, 0's: 34 Z-trim: 55 B-trim: 24 in 1/65 Lambda= 0.132262 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088098|dbj|BAD92496.1| semaphorin 3F variant ( 750) 5232 1009.0 0 gi|119585447|gb|EAW65043.1| sema domain, immunoglo ( 754) 5095 982.9 0 gi|1061351|gb|AAB18276.1| semaphorin III family ho ( 753) 5076 979.2 0 gi|109039545|ref|XP_001103514.1| PREDICTED: simila ( 754) 5056 975.4 0 gi|109039554|ref|XP_001103347.1| PREDICTED: simila ( 761) 5001 964.9 0 gi|109039551|ref|XP_001103433.1| PREDICTED: simila ( 753) 4989 962.6 0 gi|3377768|gb|AAC28109.1| semaphorin IV isoform a ( 754) 4983 961.5 0 gi|26343595|dbj|BAC35454.1| unnamed protein produc ( 754) 4978 960.5 0 gi|149018578|gb|EDL77219.1| sema domain, immunoglo ( 754) 4972 959.4 0 gi|19918956|dbj|BAB88691.1| semaphorin 3F [Gallus ( 756) 4273 826.0 0 gi|27552839|gb|AAH42914.1| Sema domain, immunoglob ( 785) 4210 814.0 0 gi|8134696|sp|Q13275|SEM3F_HUMAN Semaphorin-3F pre ( 785) 4206 813.2 0 gi|1000207|gb|AAC50568.1| semaphorin ( 785) 4205 813.1 0 gi|109039541|ref|XP_001103281.1| PREDICTED: simila ( 785) 4176 807.5 0 gi|57101622|ref|XP_541879.1| PREDICTED: similar to ( 786) 4133 799.3 0 gi|149728886|ref|XP_001496563.1| PREDICTED: sema d ( 785) 4127 798.2 0 gi|149413062|ref|XP_001508757.1| PREDICTED: simila ( 806) 4115 795.9 0 gi|8134692|sp|O88632|SEM3F_MOUSE Semaphorin-3F pre ( 785) 4109 794.7 0 gi|149018577|gb|EDL77218.1| sema domain, immunoglo ( 785) 4106 794.2 0 gi|119914707|ref|XP_609627.3| PREDICTED: similar t ( 792) 4017 777.2 0 gi|54647540|gb|AAH84913.1| Sema domain, immunoglob ( 640) 3709 718.3 1.9e-204 gi|190338322|gb|AAI63245.1| Sema3gb protein [Danio ( 746) 3211 623.4 8.5e-176 gi|169153964|emb|CAQ15293.1| semaphorin 3gb [Danio ( 745) 3210 623.2 9.7e-176 gi|57790316|gb|AAW56084.1| semaphorin 3Gb [Danio r ( 745) 3196 620.5 6.2e-175 gi|120870620|emb|CAM07328.1| semaphorin 3ga [Danio ( 749) 3158 613.3 9.5e-173 gi|57790314|gb|AAW56083.1| semaphorin 3Ga [Danio r ( 749) 3148 611.3 3.6e-172 gi|190337611|gb|AAI63771.1| Semaphorin 3fa [Danio ( 796) 3049 592.5 1.8e-166 gi|134085186|emb|CAM60073.1| sema3fa [Danio rerio] ( 796) 3043 591.3 4e-166 gi|189525400|ref|XP_001921106.1| PREDICTED: novel ( 758) 3036 590.0 9.7e-166 gi|47227342|emb|CAF96891.1| unnamed protein produc ( 747) 3030 588.8 2.1e-165 gi|94732195|emb|CAK04330.1| novel protein similar ( 688) 3026 588.0 3.4e-165 gi|57790312|gb|AAW56082.1| semaphorin 3Fb [Danio r ( 743) 3012 585.4 2.3e-164 gi|57790310|gb|AAW56081.1| semaphorin 3Fa [Danio r ( 796) 3004 583.9 6.9e-164 gi|26329809|dbj|BAC28643.1| unnamed protein produc ( 751) 2902 564.4 4.8e-158 gi|44890687|gb|AAH66852.1| Sema domain, immunoglob ( 751) 2897 563.5 9.3e-158 gi|109471623|ref|XP_231381.4| PREDICTED: similar t ( 757) 2896 563.3 1.1e-157 gi|194209413|ref|XP_001489277.2| PREDICTED: sema d ( 751) 2886 561.4 4e-157 gi|73981987|ref|XP_533139.2| PREDICTED: similar to ( 750) 2880 560.2 8.8e-157 gi|109472981|ref|XP_001064163.1| PREDICTED: simila ( 762) 2876 559.5 1.5e-156 gi|8134682|sp|Q62181.1|SEM3C_MOUSE Semaphorin-3C p ( 751) 2874 559.1 1.9e-156 gi|109067659|ref|XP_001108385.1| PREDICTED: simila ( 751) 2871 558.5 2.9e-156 gi|55726323|emb|CAH89932.1| hypothetical protein [ ( 751) 2871 558.5 2.9e-156 gi|8134685|sp|Q99985.2|SEM3C_HUMAN Semaphorin-3C p ( 751) 2863 557.0 8.4e-156 gi|114614232|ref|XP_527801.2| PREDICTED: semaphori ( 751) 2863 557.0 8.4e-156 gi|154425907|gb|AAI51370.1| SEMA3C protein [Bos ta ( 751) 2856 555.6 2.1e-155 gi|149639251|ref|XP_001507026.1| PREDICTED: simila ( 746) 2848 554.1 6e-155 gi|8134670|sp|O42236|SEM3C_CHICK Semaphorin-3C pre ( 751) 2844 553.3 1e-154 gi|194385548|dbj|BAG65151.1| unnamed protein produ ( 769) 2839 552.4 2e-154 gi|126340465|ref|XP_001370138.1| PREDICTED: hypoth ( 849) 2839 552.4 2.2e-154 gi|54261688|gb|AAH84294.1| LOC495257 protein [Xeno ( 748) 2818 548.4 3.2e-153 >>gi|62088098|dbj|BAD92496.1| semaphorin 3F variant [Hom (750 aa) initn: 5232 init1: 5232 opt: 5232 Z-score: 5395.4 bits: 1009.0 E(): 0 Smith-Waterman score: 5232; 100.000% identity (100.000% similar) in 750 aa overlap (1-750:1-750) 10 20 30 40 50 60 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDE 10 20 30 40 50 60 70 80 90 100 110 120 fk0023 DHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVRLIQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVRLIQP 70 80 90 100 110 120 130 140 150 160 170 180 fk0023 WNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTASALIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 WNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTASALIN 130 140 150 160 170 180 190 200 210 220 230 240 fk0023 EELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKL 190 200 210 220 230 240 250 260 270 280 290 300 fk0023 YFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 YFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETH 250 260 270 280 290 300 310 320 330 340 350 360 fk0023 FDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNY 310 320 330 340 350 360 370 380 390 400 410 420 fk0023 QWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRRPLVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRRPLVV 370 380 390 400 410 420 430 440 450 460 470 480 fk0023 RTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEVEVFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEVEVFK 430 440 450 460 470 480 490 500 510 520 530 540 fk0023 DPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQACSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQACSR 490 500 510 520 530 540 550 560 570 580 590 600 fk0023 YTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSPQATV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 YTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSPQATV 550 560 570 580 590 600 610 620 630 640 650 660 fk0023 KWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTRVQLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTRVQLH 610 620 630 640 650 660 670 680 690 700 710 720 fk0023 VLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWRHVPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWRHVPP 670 680 690 700 710 720 730 740 750 fk0023 SPREAPGAPRSPEPQDQKKPRNRRHHPPDT :::::::::::::::::::::::::::::: gi|620 SPREAPGAPRSPEPQDQKKPRNRRHHPPDT 730 740 750 >>gi|119585447|gb|EAW65043.1| sema domain, immunoglobuli (754 aa) initn: 5095 init1: 5095 opt: 5095 Z-score: 5254.1 bits: 982.9 E(): 0 Smith-Waterman score: 5095; 99.727% identity (99.864% similar) in 733 aa overlap (18-750:22-754) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL : ::::::::::::::::::::::::::::::::::::: gi|119 MLVAGLLLWASLLTGAWPSFPTQDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN 190 200 210 220 230 240 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG 250 260 270 280 290 300 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE 310 320 330 340 350 360 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR 370 380 390 400 410 420 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|119 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQELEELMLEEV 430 440 450 460 470 480 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ 490 500 510 520 530 540 540 550 560 570 580 590 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP 550 560 570 580 590 600 600 610 620 630 640 650 fk0023 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR 610 620 630 640 650 660 660 670 680 690 700 710 fk0023 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR 670 680 690 700 710 720 720 730 740 750 fk0023 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT :::::::::::::::::::::::::::::::::: gi|119 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT 730 740 750 >>gi|1061351|gb|AAB18276.1| semaphorin III family homolo (753 aa) initn: 3604 init1: 3604 opt: 5076 Z-score: 5234.5 bits: 979.2 E(): 0 Smith-Waterman score: 5076; 99.591% identity (99.727% similar) in 733 aa overlap (18-750:22-753) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL : ::::::::::::::::::::::::::::::::::::: gi|106 MLVAGLLLWASLLTGAWPSFPTQDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|106 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAE-N 190 200 210 220 230 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG 240 250 260 270 280 290 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE 300 310 320 330 340 350 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR 360 370 380 390 400 410 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|106 PLVVRTGAPYRLTTIAVDQVDSADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV 420 430 440 450 460 470 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ 480 490 500 510 520 530 540 550 560 570 580 590 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP 540 550 560 570 580 590 600 610 620 630 640 650 fk0023 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR 600 610 620 630 640 650 660 670 680 690 700 710 fk0023 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR 660 670 680 690 700 710 720 730 740 750 fk0023 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT :::::::::::::::::::::::::::::::::: gi|106 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT 720 730 740 750 >>gi|109039545|ref|XP_001103514.1| PREDICTED: similar to (754 aa) initn: 5056 init1: 5056 opt: 5056 Z-score: 5213.9 bits: 975.4 E(): 0 Smith-Waterman score: 5056; 98.772% identity (99.727% similar) in 733 aa overlap (18-750:22-754) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL : ::.:::::::::::::::::::::::::::::::::: gi|109 MLVAGLLLWACLLTGAWPAFPTQDHFPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|109 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDGNGECGNFVR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|109 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYILYLEPERLESGKGKCPYDPKLDTAS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN 190 200 210 220 230 240 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG 250 260 270 280 290 300 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE 310 320 330 340 350 360 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR 370 380 390 400 410 420 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|109 PLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV 430 440 450 460 470 480 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ 490 500 510 520 530 540 540 550 560 570 580 590 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP 550 560 570 580 590 600 600 610 620 630 640 650 fk0023 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR 610 620 630 640 650 660 660 670 680 690 700 710 fk0023 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR ::::::::.::::::::::..::::::::::::::::::::::::::::::::::::::: gi|109 VQLHVLGREAVHAALFPPLAVSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR 670 680 690 700 710 720 720 730 740 750 fk0023 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT ::::::::::::::::::.::::::::::::::: gi|109 HVPPSPREAPGAPRSPEPRDQKKPRNRRHHPPDT 730 740 750 >>gi|109039554|ref|XP_001103347.1| PREDICTED: similar to (761 aa) initn: 5013 init1: 3764 opt: 5001 Z-score: 5157.1 bits: 964.9 E(): 0 Smith-Waterman score: 5001; 97.432% identity (98.784% similar) in 740 aa overlap (18-750:22-761) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL : ::.:::::::::::::::::::::::::::::::::: gi|109 MLVAGLLLWACLLTGAWPAFPTQDHFPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|109 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDGNGECGNFVR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|109 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYILYLEPERLESGKGKCPYDPKLDTAS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN 190 200 210 220 230 240 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG 250 260 270 280 290 300 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE 310 320 330 340 350 360 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR 370 380 390 400 410 420 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|109 PLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV 430 440 450 460 470 480 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ 490 500 510 520 530 540 540 550 560 570 580 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCR--GF-----NSNANKNAVESVQYGVAGSAAFL :::::::::::::::::::::::::::: .: .:.:::::::::::::::::::: gi|109 ACSRYTASSKRRSRRQDVRHGNPIRQCRDAAFAQPLSHSTANKNAVESVQYGVAGSAAFL 550 560 570 580 590 600 590 600 610 620 630 640 fk0023 ECQPRSPQATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ECQPRSPQATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENN 610 620 630 640 650 660 650 660 670 680 690 700 fk0023 FKHVVTRVQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQ :::::::::::::::.::::::::::..:::::::::::::::::::::::::::::::: gi|109 FKHVVTRVQLHVLGREAVHAALFPPLAVSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQ 670 680 690 700 710 720 710 720 730 740 750 fk0023 YCQGYWRHVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT :::::::::::::::::::::::::.::::::::::::::: gi|109 YCQGYWRHVPPSPREAPGAPRSPEPRDQKKPRNRRHHPPDT 730 740 750 760 >>gi|109039551|ref|XP_001103433.1| PREDICTED: similar to (753 aa) initn: 4991 init1: 3751 opt: 4989 Z-score: 5144.8 bits: 962.6 E(): 0 Smith-Waterman score: 4989; 97.681% identity (99.181% similar) in 733 aa overlap (18-750:22-753) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL : ::.:::::::::::::::::::::::::::::::::: gi|109 MLVAGLLLWACLLTGAWPAFPTQDHFPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|109 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDGNGECGNFVR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|109 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYILYLEPERLESGKGKCPYDPKLDTAS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN 190 200 210 220 230 240 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG 250 260 270 280 290 300 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE 310 320 330 340 350 360 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR 370 380 390 400 410 420 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|109 PLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV 430 440 450 460 470 480 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ 490 500 510 520 530 540 540 550 560 570 580 590 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP :::::::::::::::::::::::::.: . ..:::::::::::::::::::::::::: gi|109 ACSRYTASSKRRSRRQDVRHGNPIRHCSQ-GPHSNKNAVESVQYGVAGSAAFLECQPRSP 550 560 570 580 590 600 610 620 630 640 650 fk0023 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR 600 610 620 630 640 650 660 670 680 690 700 710 fk0023 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR ::::::::.::::::::::..::::::::::::::::::::::::::::::::::::::: gi|109 VQLHVLGREAVHAALFPPLAVSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR 660 670 680 690 700 710 720 730 740 750 fk0023 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT ::::::::::::::::::.::::::::::::::: gi|109 HVPPSPREAPGAPRSPEPRDQKKPRNRRHHPPDT 720 730 740 750 >>gi|3377768|gb|AAC28109.1| semaphorin IV isoform a [Mus (754 aa) initn: 4983 init1: 4983 opt: 4983 Z-score: 5138.6 bits: 961.5 E(): 0 Smith-Waterman score: 4983; 97.264% identity (99.453% similar) in 731 aa overlap (20-750:24-754) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL :.::::::::::::::::::::::::::::::::::: gi|337 MLVTAFILWASLLTGAWPATPIQDQLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR ::::::::::::::::::::::::::::::::::::::::::::.::::: ::::::::: gi|337 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECILSGKDGNGECGNFVR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|337 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPEKLESGKGKCPYDPKLDTAS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|337 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN 190 200 210 220 230 240 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|337 DDKLYFFFRERSAEAPQNPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG 250 260 270 280 290 300 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|337 IETHFDELQDVFVQQTQDIRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE 310 320 330 340 350 360 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|337 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRTHPLMYQAVYPLQRR 370 380 390 400 410 420 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV ::::::::::::::.::::::::::::::::::::::::::::::::::::.:::::::: gi|337 PLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEVEELMLEEV 430 440 450 460 470 480 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|337 EVFKEPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ 490 500 510 520 530 540 540 550 560 570 580 590 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|337 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP 550 560 570 580 590 600 600 610 620 630 640 650 fk0023 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR ::::::::::::.::::::::::::::::::::::::::.::::::::::::::::.::: gi|337 QATVKWLFQRDPSDRRREIRAEDRFLRTEQGLLLRALQLGDRGLYSCTATENNFKHIVTR 610 620 630 640 650 660 660 670 680 690 700 710 fk0023 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR :::::::::::::::::::..:.:::::.::::::::::::::::::::::::::::::: gi|337 VQLHVLGRDAVHAALFPPLAVSVPPPPGTGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR 670 680 690 700 710 720 720 730 740 750 fk0023 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT :::::::::::: : :: :::::::::::::::: gi|337 HVPPSPREAPGALRPPELQDQKKPRNRRHHPPDT 730 740 750 >>gi|26343595|dbj|BAC35454.1| unnamed protein product [M (754 aa) initn: 4978 init1: 4978 opt: 4978 Z-score: 5133.4 bits: 960.5 E(): 0 Smith-Waterman score: 4978; 97.264% identity (99.316% similar) in 731 aa overlap (20-750:24-754) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL :.::::::::::::::::::::::::::::::::::: gi|263 MLVTAFILWASLLTGAWPATPIQDQLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR ::::::::::::::::::::::::::::::::::::::::::::.::::: ::::::::: gi|263 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECILSGKDGNGECGNFVR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|263 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPEKLESGKGKCPYDPKLDTAS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN 190 200 210 220 230 240 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|263 DDKLYFFFRERSAEAPQNPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG 250 260 270 280 290 300 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE 310 320 330 340 350 360 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|263 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRTHPLMYQAVYPLQRR 370 380 390 400 410 420 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV ::::::::::::::.::::::::::::::::::::::::::::::::::::.:::::::: gi|263 PLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEVEELMLEEV 430 440 450 460 470 480 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 EVFKEPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ 490 500 510 520 530 540 540 550 560 570 580 590 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP 550 560 570 580 590 600 600 610 620 630 640 650 fk0023 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR ::::::::::::.::::::::::::::::::::::::::.::::::::::::::::.::: gi|263 QATVKWLFQRDPSDRRREIRAEDRFLRTEQGLLLRALQLGDRGLYSCTATENNFKHIVTR 610 620 630 640 650 660 660 670 680 690 700 710 fk0023 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR :::::::::::::::::::..:.:::::.::::::::::::::::::::::::::::::: gi|263 VQLHVLGRDAVHAALFPPLAVSVPPPPGTGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR 670 680 690 700 710 720 720 730 740 750 fk0023 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT :::: ::::::: : :: :::::::::::::::: gi|263 HVPPRPREAPGALRPPELQDQKKPRNRRHHPPDT 730 740 750 >>gi|149018578|gb|EDL77219.1| sema domain, immunoglobuli (754 aa) initn: 4972 init1: 4972 opt: 4972 Z-score: 5127.2 bits: 959.4 E(): 0 Smith-Waterman score: 4972; 96.990% identity (99.453% similar) in 731 aa overlap (20-750:24-754) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL :.::::::::::::::::::::::::::::::::::: gi|149 MLVTGFILWASLLTGAWPAAPIQDQLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR .:::::::::::::::::::::::::::::::::::::::::::.::::: ::::::::: gi|149 FKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECILSGKDGNGECGNFVR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS ::::::::::::::::::::::::::::::.::::::::::.:::::::::::::::::: gi|149 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRSQDYIFYLEPEKLESGKGKCPYDPKLDTAS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN 190 200 210 220 230 240 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|149 DDKLYFFFRERSAEAPQNPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG 250 260 270 280 290 300 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE 310 320 330 340 350 360 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|149 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRTHPLMYQAVYPLQRR 370 380 390 400 410 420 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV ::::::::::::::.::::::::::::::::::::::::::::::::::::.:::::::: gi|149 PLVVRTGAPYRLTTVAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEVEELMLEEV 430 440 450 460 470 480 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EVFKEPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ 490 500 510 520 530 540 540 550 560 570 580 590 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|149 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAIESVQYGVAGSAAFLECQPRSP 550 560 570 580 590 600 600 610 620 630 640 650 fk0023 QATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTR ::::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::: gi|149 QATVKWLFQRDPSDRRREIRAEDRFLRTEQGLLLRALQLGDRGLYSCTATENNFKHVVTR 610 620 630 640 650 660 660 670 680 690 700 710 fk0023 VQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR :::::::::::::::::::..:.:::::.::::::::::::::::::::::::::::::: gi|149 VQLHVLGRDAVHAALFPPLAVSVPPPPGTGPPTPPYQELAQLLAQPEVGLIHQYCQGYWR 670 680 690 700 710 720 720 730 740 750 fk0023 HVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT ::::.::::::: : :: :::::::::::::::: gi|149 HVPPNPREAPGALRPPELQDQKKPRNRRHHPPDT 730 740 750 >>gi|19918956|dbj|BAB88691.1| semaphorin 3F [Gallus gall (756 aa) initn: 4320 init1: 3742 opt: 4273 Z-score: 4406.4 bits: 826.0 E(): 0 Smith-Waterman score: 4273; 82.650% identity (93.716% similar) in 732 aa overlap (20-750:24-752) 10 20 30 40 50 fk0023 ERANEPRRSGEPRAQRRTWDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRIL : .: ::::.::::::::::::::::::::..::::: gi|199 MPVATVLLWATLLTLGWRAAHGKDGVPPTPRVQLSFKELKATGTAHFFNFLLNSSDYRIL 10 20 30 40 50 60 60 70 80 90 100 110 fk0023 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVR :::::::::::::::::::::::::::::::::: :: ::::::.::::. :::::::.: gi|199 LKDEDHDRMYVGSKDYVLSLDLHDINREPLIIHWPASQQRIEECILSGKNSNGECGNFIR 70 80 90 100 110 120 120 130 140 150 160 170 fk0023 LIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTAS ::::::::::::::::::::.:...::::.::::::::::..:::::::: ::::.::.: gi|199 LIQPWNRTHLYVCGTGAYNPICAFINRGRKAQDYIFYLEPDKLESGKGKCSYDPKVDTVS 130 140 150 160 170 180 180 190 200 210 220 230 fk0023 ALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERN :::::::::::::::::::::::::.:::::::::::::::::::.:..:.:::::.::: gi|199 ALINEELYAGVYIDFMGTDAAIFRTMGKQTAMRTDQYNSRWLNDPAFVRAQLIPDSSERN 190 200 210 220 230 240 240 250 260 270 280 290 fk0023 DDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDG ::::::::::.::.:: ::.::.:::::::::::::::::::::::::::::::::: :: gi|199 DDKLYFFFREKSADAPLSPGVYSRIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGPDG 250 260 270 280 290 300 300 310 320 330 340 350 fk0023 IETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKE ::::::::::::.:::::..::::::::..:::::.::::::::::::::::: :::::: gi|199 IETHFDELQDVFIQQTQDTKNPVIYAVFSASGSVFKGSAVCVYSMADIRMVFNRPFAHKE 310 320 330 340 350 360 360 370 380 390 400 410 fk0023 GPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR ::::::::..:::::::::::::::::::::::::::::::::::::::::.:::: .:. gi|199 GPNYQWMPYTGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYHAVYPAHRQ 370 380 390 400 410 420 420 430 440 450 460 470 fk0023 PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQEMEELMLEEV ::::::.. ::.::::::::::::::::::::::::::::::::::.::.: :::::::. gi|199 PLVVRTNVNYRFTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPRDDMETEELMLEEI 430 440 450 460 470 480 480 490 500 510 520 530 fk0023 EVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQ :::: :::.: ::::::::::::.::::::::.::::..:: :::::::::::::::::. gi|199 EVFKVPAPIKMMTISSKRQQLYVSSAVGVTHLALHRCDVYGEACADCCLARDPYCAWDGK 490 500 510 520 530 540 540 550 560 570 580 590 fk0023 ACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSP :::::.:::::::::::::::::.:::::.:::::::.::.::::: ::.:::::::::: gi|199 ACSRYSASSKRRSRRQDVRHGNPMRQCRGYNSNANKNTVEAVQYGVEGSTAFLECQPRSP 550 560 570 580 590 600 600 610 620 630 640 650 fk0023 QATVKWLFQRDPGDRRREIRAED-RFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVT :::::::.:.: .:::.:.:.: : :::::::::::::::: ::::::::::::::.:: gi|199 QATVKWLLQKDNSDRRKELRTEGGRALRTEQGLLLRALQLSDSGLYSCTATENNFKHTVT 610 620 630 640 650 660 660 670 680 690 700 710 fk0023 RVQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYW .:::.::. ::::.: :. :: : ::: ::.: :::..::.::. :::::.: gi|199 KVQLRVLAARAVHAVL---LQGELPPAALPGAPTPRYQDLLQLLTRPELGLLDQYCQGFW 670 680 690 700 710 720 730 740 750 fk0023 RHVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT : :.: : .: .. : :::::::.::.:::.. gi|199 RPPAPGPPEPLAALKAKELQDQKKPRSRRNHPPESCGHT 720 730 740 750 750 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 21:47:12 2008 done: Sun Aug 10 21:49:34 2008 Total Scan time: 970.030 Total Display time: 0.350 Function used was FASTA [version 34.26.5 April 26, 2007]