hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-21493564/chunk_1/iprscan-20080810-21493564.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk00237 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 849.8 1.3e-252 1 PF01403.10.fs Sema domain 847.8 5.2e-252 1 PF00047.15.fs Immunoglobulin domain 24.2 7e-06 1 PF00047.15.ls Immunoglobulin domain 26.1 0.00012 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.fs 1/1 53 494 .. 1 490 [] 847.8 5.2e-252 PF01403.10.ls 1/1 53 494 .. 1 490 [] 849.8 1.3e-252 PF00047.15.fs 1/1 584 645 .. 1 65 [] 24.2 7e-06 PF00047.15.ls 1/1 584 645 .. 1 65 [] 26.1 0.00012 Alignments of top-scoring domains: PF01403.10.fs: domain 1 of 1, from 53 to 494: score 847.8, E = 5.2e-252 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +r+ll+ded++r+yVG +++v++L+l+d+ +r+ + i+W++s +++ fk00237 53 YRILLKDEDHDRMYVGSKDYVLSLDLHDI-NREPLIIHWAAS--PQR 96 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +eeC++ Gk+ V+ eC Nf+r++qp+n+thLyvCGT+a++P+Ct++n+ fk00237 97 IEECVLSGKD---VNGECGNFVRLIQPWNRTHLYVCGTGAYNPMCTYVNR 143 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL g+r++ d++F l++e++esGkg+CPydP+ ++s l+ + +eL fk00237 144 GRRAQ-------DYIFYLEPERLESGKGKCPYDPKLDTASALI-N--EEL 183 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy Y+G+++D F+G+d+aI+R+lg++ +rT+q++s+wln+P+F+++ fk00237 184 YAGVYID------FMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAE 227 pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl +ip++ +++Ddk YFFFrE++ e+ p++ +a+y+R++R+C nD GG+++l fk00237 228 LIPDSAERNDDKLYFFFRERSAEA-PQS-PAVYARIGRICLNDDGGHCCL 275 elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs + nkW+TFLKARL+CSvpGe+gi+ ++F+eLQ+vf+ +t++ fk00237 276 V-NKWSTFLKARLVCSVPGEDGIE-THFDELQDVFVQQTQDV-------- 315 erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg r+pviY+VFt+s ++++g SAVC++sm+dIr+vF nGpf+h+ Eg fk00237 316 -RNPVIYAVFTSSGSVFRG----SAVCVYSMADIRMVF-NGPFAHK--EG 357 pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm pn++w+p+ g k+PyPRPG+Cp+++++p+++Stkd+PD+++nf++shpLm fk00237 358 PNYQWMPFSG-KMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLM 406 devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt +++v+Pl++rPl+v+t+ +yrlT IaVd +V+a+dG+ Y VlFlGTd+Gt fk00237 407 YQAVYPLQRRPLVVRTGAPYRLTTIAVD-QVDAADGR-YEVLFLGTDRGT 454 vlKkvvvlsrssssyeevvleelqvfkdpriePvqnleisskq<-* v+ kv+vl+++++ +ee++lee++vfkdp +Pv++++issk+ fk00237 455 VQ-KVIVLPKDDQEMEELMLEEVEVFKDP--APVKTMTISSKR 494 PF01403.10.ls: domain 1 of 1, from 53 to 494: score 849.8, E = 1.3e-252 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +r+ll+ded++r+yVG +++v++L+l+d+ +r+ + i+W++s +++ fk00237 53 YRILLKDEDHDRMYVGSKDYVLSLDLHDI-NREPLIIHWAAS--PQR 96 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +eeC++ Gk+ V+ eC Nf+r++qp+n+thLyvCGT+a++P+Ct++n+ fk00237 97 IEECVLSGKD---VNGECGNFVRLIQPWNRTHLYVCGTGAYNPMCTYVNR 143 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL g+r++ d++F l++e++esGkg+CPydP+ ++s l+ + +eL fk00237 144 GRRAQ-------DYIFYLEPERLESGKGKCPYDPKLDTASALI-N--EEL 183 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy Y+G+++D F+G+d+aI+R+lg++ +rT+q++s+wln+P+F+++ fk00237 184 YAGVYID------FMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAE 227 pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl +ip++ +++Ddk YFFFrE++ e+ p++ +a+y+R++R+C nD GG+++l fk00237 228 LIPDSAERNDDKLYFFFRERSAEA-PQS-PAVYARIGRICLNDDGGHCCL 275 elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs + nkW+TFLKARL+CSvpGe+gi+ ++F+eLQ+vf+ +t++ fk00237 276 V-NKWSTFLKARLVCSVPGEDGIE-THFDELQDVFVQQTQDV-------- 315 erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg r+pviY+VFt+s ++++g SAVC++sm+dIr+vF nGpf+h+ Eg fk00237 316 -RNPVIYAVFTSSGSVFRG----SAVCVYSMADIRMVF-NGPFAHK--EG 357 pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm pn++w+p+ g k+PyPRPG+Cp+++++p+++Stkd+PD+++nf++shpLm fk00237 358 PNYQWMPFSG-KMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLM 406 devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt +++v+Pl++rPl+v+t+ +yrlT IaVd +V+a+dG+ Y VlFlGTd+Gt fk00237 407 YQAVYPLQRRPLVVRTGAPYRLTTIAVD-QVDAADGR-YEVLFLGTDRGT 454 vlKkvvvlsrssssyeevvleelqvfkdpriePvqnleisskq<-* v+ kv+vl+++++ +ee++lee++vfkdp +Pv++++issk+ fk00237 455 VQ-KVIVLPKDDQEMEELMLEEVEVFKDP--APVKTMTISSKR 494 PF00047.15.fs: domain 1 of 1, from 584 to 645: score 24.2, E = 7e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ + L C+ ++p++tv Wl++ + + +++ + + ++ fk00237 584 GSAAFLECQP---RSPQATVKWLFQRDpGDrRREIRAEDRFLRTEQG 627 tsLtitnvtpeDggtYtCvv<-* L +++++ +D g Y+C++ fk00237 628 --LLLRALQLSDRGLYSCTA 645 PF00047.15.ls: domain 1 of 1, from 584 to 645: score 26.1, E = 0.00012 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ + L C+ ++p++tv Wl++ + + +++ + + ++ fk00237 584 GSAAFLECQP---RSPQATVKWLFQRDpGDrRREIRAEDRFLRTEQG 627 tsLtitnvtpeDggtYtCvv<-* L +++++ +D g Y+C++ fk00237 628 --LLLRALQLSDRGLYSCTA 645 //