hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21493564/chunk_1/iprscan-20080810-21493564.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk00237
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00630                                                 701.0   3.4e-206   1
SM00423                                                  57.2    2.1e-12   1
SM00409                                                  40.3    2.7e-07   1
SM00408                                                  25.6     0.0071   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00630    1/1      53   494 ..     1   532 []   701.0 3.4e-206
SM00423    1/1     512   564 ..     1    56 []    57.2  2.1e-12
SM00409    1/1     576   662 ..     1    58 []    40.3  2.7e-07
SM00408    1/1     582   650 ..     1    56 []    25.6   0.0071

Alignments of top-scoring domains:
SM00630: domain 1 of 1, from 53 to 494: score 701.0, E = 3.4e-206
                   *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps
                      +++ll ded++  r yVG++++++sL+l++++      ++  ++w++
     fk00237    53    YRILLKDEDHD--RMYVGSKDYVLSLDLHDINR-----EPLIIHWAA 92   

                   ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv
                   ++       ++eeC   gk    +  +eC N++r+++++n+    thLyv
     fk00237    93 SPQ------RIEECVLSGK----DVNGECGNFVRLIQPWNR----THLYV 128  

                   CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg
                   CGT+a++P  +C++ n+g++        +d i++l++      ++esg+g
     fk00237   129 CGTGAYNP--MCTYVNRGRRA-------QDYIFYLEPE-----RLESGKG 164  

                   kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs
                   kCPydP+  ++s ++++      eLY+g ++df+g       +d++ifR+
     fk00237   165 KCPYDPKLDTASALINE------ELYAGVYIDFMG-------TDAAIFRT 201  

                   lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipes.g.dgdfV
                   lg         ++  rt++y+s+w   ln+p F++a  ip+s  +++d+ 
     fk00237   202 LG--------KQTAMRTDQYNSRW---LNDPSFIHAELIPDSaErNDDKL 240  

                   YFFFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSFLKa
                   YFFFrE++ ea   ++s  +av++R++R+C+nD GG+++L++kW++FLKa
     fk00237   241 YFFFRERSAEA---PQS--PAVYARIGRICLNDDGGHCCLVNKWSTFLKA 285  

                   rLnCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVFsqg
                   rL+Csvpg +g++ ++F+eLQ+vf+ ++    ++ +   ++v+Y+VF+  
     fk00237   286 RLVCSVPGEDGIE-THFDELQDVFVQQT----QDVR---NPVIYAVFT-- 325  

                   qqtssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpvegn
                     +s+    ++++gSAVC++s++dI+ vFn Gpf+++egpn++w+p++g 
     fk00237   326 --SSG----SVFRGSAVCVYSMADIRMVFN-GPFAHKEGPNYQWMPFSG- 367  

                   kvPyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPltg
                   k PyprPGtC+++tf++   + s+kd+Pd+v+nf+++hpLm++av+Pl++
     fk00237   368 KMPYPRPGTCPGGTFTP--SMKSTKDYPDEVINFMRSHPLMYQAVYPLQR 415  

                   rPllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvlKvvvsr
                   rPl v+tg+ yrlT iaVd+v+++dG+   y VlFlGT++G+v Kv+v +
     fk00237   416 RPLVVRTGAPYRLTTIAVDQVDAADGR---YEVLFLGTDRGTVQKVIVLP 462  

                   sssssssaglesvlleelqvfppgsepirdmvlsskk<-*
                   +++    +++e+++lee++vf+++ +p+++m++ssk+   
     fk00237   463 KDD----QEMEELMLEEVEVFKDP-APVKTMTISSKR    494  

SM00423: domain 1 of 1, from 512 to 564: score 57.2, E = 2.1e-12
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                      rC++yg   C++C+lardpy C+W+  +++C+r+ + ++rr++rq++
     fk00237   512    RCQAYG-AACADCCLARDPY-CAWD--GQACSRYTASSKRRSRRQDV 554  

                   ssg.pssqCp<-*
                   ++g+p +qC    
     fk00237   555 RHGnPIRQCR    564  

SM00409: domain 1 of 1, from 576 to 662: score 40.3, E = 2.7e-07
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       + +++++G+ + L+C+  ++  t++W+ +++++++++  +  ++  
     fk00237   576    ESvQYGVAGSAAFLECqPRspqaTVKWLfqrdpgdrrreiraedrfl 622  

                   .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++ ++L ++ ++++D    G Y C+at ++ ++     ++L+Vl   
     fk00237   623 rteqgLLLrALQLSDR---GLYSCTATenNFKHVV-TRVQLHVL    662  

SM00408: domain 1 of 1, from 582 to 650: score 25.6, E = 0.0071
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst
                        G ++ L+C    +p ++++Wl++  p +++++ + +++  ++++ 
     fk00237   582    VAGSAAFLECQ-PRSPQATVKWLFqRDPGDrrreiraedrflrTEQG 627  

                   LtiknvsleDsGlYtCvArNsvg<-*
                   L ++  +l+D+GlY+C+A+ ++    
     fk00237   628 LLLRALQLSDRGLYSCTATENNF    650  

//