hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21551507/chunk_1/iprscan-20080810-21551507.nocrc
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Query sequence: fk00416
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             49.4    1.1e-11   4
PF00560.23.fs Leucine Rich Repeat                             45.3    2.4e-11   5
PF07647.7.fs SAM domain (Sterile alpha motif)                33.7    3.1e-09   1
PF07647.7.ls SAM domain (Sterile alpha motif)                34.0    4.7e-07   1
PF00536.20.fs SAM domain (Sterile alpha motif)                23.6    2.7e-06   1
PF00536.20.ls SAM domain (Sterile alpha motif)                25.5    0.00017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.fs   2/5      90   111 ..     1    24 []    14.1   0.0082
PF00560.23.ls   1/4      90   111 ..     1    24 []    16.0     0.13
PF00560.23.ls   2/4     113   134 ..     1    24 []    10.3      3.2
PF00560.23.ls   3/4     136   157 ..     1    24 []    10.6      2.8
PF00560.23.ls   4/4     159   177 ..     1    24 []    12.6      1.1
PF00536.20.fs   1/1     575   638 ..     1    65 []    23.6  2.7e-06
PF00536.20.ls   1/1     575   638 ..     1    65 []    25.5  0.00017
PF07647.7.ls   1/1     575   640 ..     1    72 []    34.0  4.7e-07
PF07647.7.fs   1/1     581   640 ..     8    72 .]    33.7  3.1e-09

Alignments of top-scoring domains:
PF00560.23.fs: domain 2 of 5, from 90 to 111: score 14.1, E = 0.0082
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      ++++LdL++ N +lt  lp++l+ l   
     fk00416    90    TIKVLDLHD-N-QLT-ALPDDLgQL    111  

PF00560.23.ls: domain 1 of 4, from 90 to 111: score 16.0, E = 0.13
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      ++++LdL++ N +lt  lp++l+ l   
     fk00416    90    TIKVLDLHD-N-QLT-ALPDDLgQL    111  

PF00560.23.ls: domain 2 of 4, from 113 to 134: score 10.3, E = 3.2
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                       L++L++++ N +l   lp s++nl   
     fk00416   113    ALQVLNVER-N-QLM-QLPRSIgNL    134  

PF00560.23.ls: domain 3 of 4, from 136 to 157: score 10.6, E = 2.8
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L++L++ + N +l ++lp+ ++ l   
     fk00416   136    QLQTLNVKD-N-KL-KELPDTVgEL    157  

PF00560.23.ls: domain 4 of 4, from 159 to 177: score 12.6, E = 1.1
                   *->nLeeLdLsgCNpsltgslpsslnl<-*
                      +L++L++sg N  ++  lp    l   
     fk00416   159    SLRTLNISG-N-EIQ-RLPQ--ML    177  

PF00536.20.fs: domain 1 of 1, from 575 to 638: score 23.6, E = 2.7e-06
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      ++   +++   Le++  ++Y   F ++++ ++d l+q+++ DL ++G
     fk00416   575    EEGMERQLVALLEELSAEHYLPIF-AHHRLSLDLLSQMSPGDLAKVG 620  

                   vtllGHrkKIlssIqgLk<-*
                   v  +G ++ Il+++q L    
     fk00416   621 VSEAGLQHEILRRVQELL    638  

PF00536.20.ls: domain 1 of 1, from 575 to 638: score 25.5, E = 0.00017
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      ++   +++   Le++  ++Y   F ++++ ++d l+q+++ DL ++G
     fk00416   575    EEGMERQLVALLEELSAEHYLPIF-AHHRLSLDLLSQMSPGDLAKVG 620  

                   vtllGHrkKIlssIqgLk<-*
                   v  +G ++ Il+++q L    
     fk00416   621 VSEAGLQHEILRRVQELL    638  

PF07647.7.ls: domain 1 of 1, from 575 to 640: score 34.0, E = 4.7e-07
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      +e     ++ + Le++   ++Y ++F  + ++  +ll  +++  dL 
     fk00416   575    EEGMER-QLVALLEELSA-EHYLPIFAHHRLSL-DLL-SQMSPGDL- 616  

                   klalGitsvghRkkilkkiqelkqq<-*
                   + + G++ +g +++il+ +qel++    
     fk00416   617 A-KVGVSEAGLQHEILRRVQELLDA    640  

PF07647.7.fs: domain 1 of 1, from 581 to 640: score 33.7, E = 3.1e-09
                   *->svaeWLesiglegqYkdnFsdqgitglellllrlteedLaklalGit
                      ++ + Le++   ++Y ++F  + ++  +ll  +++  dL + + G++
     fk00416   581    QLVALLEELSA-EHYLPIFAHHRLSL-DLL-SQMSPGDL-A-KVGVS 622  

                   svghRkkilkkiqelkqq<-*
                    +g +++il+ +qel++    
     fk00416   623 EAGLQHEILRRVQELLDA    640  

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