hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-21551507/chunk_1/iprscan-20080810-21551507.nocrc
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Query sequence: fk00416
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  61.4    1.1e-13   4
SM00364                                                  49.9    3.3e-10   4
SM00454                                                  28.7     0.0008   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00364     1/4      88   107 ..     1    20 []     7.0       76
SM00369     1/4      88   110 ..     1    24 []    12.9       11
SM00369     2/4     111   133 ..     1    24 []    16.8      3.1
SM00364     2/4     111   130 ..     1    20 []    10.3       28
SM00369     3/4     134   155 ..     1    24 []    12.7       12
SM00364     3/4     134   153 ..     1    20 []    17.8      1.5
SM00364     4/4     157   176 ..     1    20 []    14.8      7.2
SM00369     4/4     157   179 ..     1    24 []    19.0     0.67
SM00454     1/1     574   640 ..     1    67 []    28.7   0.0008

Alignments of top-scoring domains:
SM00364: domain 1 of 4, from 88 to 107: score 7.0, E = 76
                   *->PpsLkeLnvsnNrLteLPeL<-*
                       +++k L+  +N+Lt LP+    
     fk00416    88    LATIKVLDLHDNQLTALPDD    107  

SM00369: domain 1 of 4, from 88 to 110: score 12.9, E = 11
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L   ++LdL++NqLt+LP+++ +    
     fk00416    88    LATIKVLDLHDNQLTALPDDL-GQ    110  

SM00369: domain 2 of 4, from 111 to 133: score 16.8, E = 3.1
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++L+ ++NqL +LP+ + ++   
     fk00416   111    LTALQVLNVERNQLMQLPRSI-GN    133  

SM00364: domain 2 of 4, from 111 to 130: score 10.3, E = 28
                   *->PpsLkeLnvsnNrLteLPeL<-*
                        +L+ Lnv++N+L  LP     
     fk00416   111    LTALQVLNVERNQLMQLPRS    130  

SM00369: domain 3 of 4, from 134 to 155: score 12.7, E = 12
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++L+  +N+L++LP+ +  g   
     fk00416   134    LTQLQTLNVKDNKLKELPDTV--G    155  

SM00364: domain 3 of 4, from 134 to 153: score 17.8, E = 1.5
                   *->PpsLkeLnvsnNrLteLPeL<-*
                        +L++Lnv +N+L+eLP+    
     fk00416   134    LTQLQTLNVKDNKLKELPDT    153  

SM00364: domain 4 of 4, from 157 to 176: score 14.8, E = 7.2
                   *->PpsLkeLnvsnNrLteLPeL<-*
                        sL++Ln+s+N++ +LP++   
     fk00416   157    LRSLRTLNISGNEIQRLPQM    176  

SM00369: domain 4 of 4, from 157 to 179: score 19.0, E = 0.67
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++Lr+L+ s+N +++LP +++++   
     fk00416   157    LRSLRTLNISGNEIQRLP-QMLAH    179  

SM00454: domain 1 of 1, from 574 to 640: score 28.7, E = 0.0008
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       ++  ++++ + Le +  e+Y ++F+ ++++ ++l +++   dL ++
     fk00416   574    QEeGMERQLVALLEELSAEHYLPIFAHHRLSLDLLSQMS-PGDLAKV 619  

                   GitllGhRkkIlsaiqklkeq<-*
                   G++ +G ++ Il+ +q+l++    
     fk00416   620 GVSEAGLQHEILRRVQELLDA    640  

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