hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-10553498/chunk_1/iprscan-20090618-10553498.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk00565 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01153.10.ls Glypican 1199.4 0 1 PF01153.10.fs Glypican 1197.8 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01153.10.fs 1/1 46 614 .. 1 625 [] 1197.8 0 PF01153.10.ls 1/1 46 614 .. 1 625 [] 1199.4 0 Alignments of top-scoring domains: PF01153.10.fs: domain 1 of 1, from 46 to 614: score 1197.8, E = 0 *->lwllcllsldLpgsArgaeakskrsCaEVRqlfgakgfsALngvPqs l++++llsld+pg+A++++++++++C++VR++f++++++ L++vP++ fk00565 46 LVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPG-LKWVPET 91 eisGehLqIClPqgyTCCsseMEEkyqlkArqdfeqlLqessssLqflLa +++G++Lq+ClP+g+TCCs++MEEkyql+Ar+++eqlLq++s++L+fl++ fk00565 92 PVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLII 141 tnakkFqefFeeLlniSEnslnalFsktYgrLypQnaelfkdLFtelrlY +na++Fqe+Fe+++++++n++na+F+++Y++L+pQ++e+++++Ft+++lY fk00565 142 QNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLY 191 yrgsnNYTNSNGQLGRRGIGSVQvNLEEalneFwarLlerafkqLhnpSK ++gs+ +N+++++ne++++L++++++qL+np fk00565 192 ILGSD------------------INVDDMVNELFDSLFPVIYTQLMNP-- 221 NgqydltdDYleCLrkaretADGdlkPFGdiPrrlklqvtRalvaaRtFl g++d+++D++eCLr+ar+ dlk+FG++P+++++qv+++l+++R+Fl fk00565 222 -GLPDSALDINECLRGARR----DLKVFGNFPKLIMTQVSKSLQVTRIFL 266 QgLnvGieVvskvdqvpGEQlskeCsrALlKmiYCPhCrGlasSSRSEvK Q+Ln+GieV++++d+++ +sk+C+r+L++m+YC++C+Gl++ vK fk00565 267 QALNLGIEVINTTDHLK---FSKDCGRMLTRMWYCSYCQGLMM-----VK 308 PCyGYClNVmrGCLAnqAdLLDpeWrgyiDSLNelladkleGpydienVi PC+GYC++Vm+GC+A++++ +D++Wr+yi+SL e+l+++++++yd+enV+ fk00565 309 PCGGYCNVVMQGCMAGVVE-IDKYWREYILSL-EELVNGMYRIYDMENVL 356 lsihvkiseAImalQeNgvkLtaKVfqgCGtPkptpygsrrasgpedkrS l+++++i+++I+++Q+N++kLt++++++C+++++++y+ +a++ped++ fk00565 357 LGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQRQYR--SAYYPEDLF- 403 irkrplkpeerpttetGTnLerlvvelkekLkkvksFwsgLPgtlCsDer i+k++lk+++++++et L+++++el++kLk+++sF+s+LPg++Cs fk00565 404 IDKKVLKVAHVEHEET---LSSRRRELIQKLKSFISFYSALPGYICS--- 447 maasaaddAdpCWNGedgvgrYlqeVvgnGlanQinNPEVevdgskPDmv ++++a++d ++CWNG+++v+rY+q++++nG++nQ+n++E++++g++P v fk00565 448 HSPVAEND-TLCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEP--V 494 irqqIdkLkhitnrLkaAasgndvdfqDasddssGGmVEsGSGdgCgDie ++q+IdkLkhi+ +L++++s+++++++D+++d++G ++SGd CgD+e fk00565 495 VSQIIDKLKHIN-QLLRTMSMPKGRVLDKNLDEEG----FESGD-CGDDE 538 DecggsgsakssstrnitRFLAELAYdpdgddaPgeSkqtgqkdsgssds Dec+g++++++++++n++RFLAELAYd+d+ddaPg+S+q+++kd+++s++ fk00565 539 DECIGGSGDGMIKVKNQLRFLAELAYDLDVDDAPGNSQQATPKDNEISTF 588 gstagvppalllltsmlilvVqrlFslw<-* +++++v+++l+lltsm+i+vV+++ ++ fk00565 589 HNLGNVHSPLKLLTSMAISVVCFF--FL 614 PF01153.10.ls: domain 1 of 1, from 46 to 614: score 1199.4, E = 0 *->lwllcllsldLpgsArgaeakskrsCaEVRqlfgakgfsALngvPqs l++++llsld+pg+A++++++++++C++VR++f++++++ L++vP++ fk00565 46 LVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQRLQPG-LKWVPET 91 eisGehLqIClPqgyTCCsseMEEkyqlkArqdfeqlLqessssLqflLa +++G++Lq+ClP+g+TCCs++MEEkyql+Ar+++eqlLq++s++L+fl++ fk00565 92 PVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKFLII 141 tnakkFqefFeeLlniSEnslnalFsktYgrLypQnaelfkdLFtelrlY +na++Fqe+Fe+++++++n++na+F+++Y++L+pQ++e+++++Ft+++lY fk00565 142 QNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLY 191 yrgsnNYTNSNGQLGRRGIGSVQvNLEEalneFwarLlerafkqLhnpSK ++gs+ +N+++++ne++++L++++++qL+np fk00565 192 ILGSD------------------INVDDMVNELFDSLFPVIYTQLMNP-- 221 NgqydltdDYleCLrkaretADGdlkPFGdiPrrlklqvtRalvaaRtFl g++d+++D++eCLr+ar+ dlk+FG++P+++++qv+++l+++R+Fl fk00565 222 -GLPDSALDINECLRGARR----DLKVFGNFPKLIMTQVSKSLQVTRIFL 266 QgLnvGieVvskvdqvpGEQlskeCsrALlKmiYCPhCrGlasSSRSEvK Q+Ln+GieV++++d+++ +sk+C+r+L++m+YC++C+Gl++ vK fk00565 267 QALNLGIEVINTTDHLK---FSKDCGRMLTRMWYCSYCQGLMM-----VK 308 PCyGYClNVmrGCLAnqAdLLDpeWrgyiDSLNelladkleGpydienVi PC+GYC++Vm+GC+A++++ +D++Wr+yi+SL e+l+++++++yd+enV+ fk00565 309 PCGGYCNVVMQGCMAGVVE-IDKYWREYILSL-EELVNGMYRIYDMENVL 356 lsihvkiseAImalQeNgvkLtaKVfqgCGtPkptpygsrrasgpedkrS l+++++i+++I+++Q+N++kLt++++++C+++++++y+ +a++ped++ fk00565 357 LGLFSTIHDSIQYVQKNAGKLTTTIGKLCAHSQQRQYR--SAYYPEDLF- 403 irkrplkpeerpttetGTnLerlvvelkekLkkvksFwsgLPgtlCsDer i+k++lk+++++++et L+++++el++kLk+++sF+s+LPg++Cs fk00565 404 IDKKVLKVAHVEHEET---LSSRRRELIQKLKSFISFYSALPGYICS--- 447 maasaaddAdpCWNGedgvgrYlqeVvgnGlanQinNPEVevdgskPDmv ++++a++d ++CWNG+++v+rY+q++++nG++nQ+n++E++++g++P v fk00565 448 HSPVAEND-TLCWNGQELVERYSQKAARNGMKNQFNLHELKMKGPEP--V 494 irqqIdkLkhitnrLkaAasgndvdfqDasddssGGmVEsGSGdgCgDie ++q+IdkLkhi+ +L++++s+++++++D+++d++G ++SGd CgD+e fk00565 495 VSQIIDKLKHIN-QLLRTMSMPKGRVLDKNLDEEG----FESGD-CGDDE 538 DecggsgsakssstrnitRFLAELAYdpdgddaPgeSkqtgqkdsgssds Dec+g++++++++++n++RFLAELAYd+d+ddaPg+S+q+++kd+++s++ fk00565 539 DECIGGSGDGMIKVKNQLRFLAELAYDLDVDDAPGNSQQATPKDNEISTF 588 gstagvppalllltsmlilvVqrlFslw<-* +++++v+++l+lltsm+i+vV+++ ++ fk00565 589 HNLGNVHSPLKLLTSMAISVVCFF--FL 614 //