# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk00577.fasta.nr -Q fk00577.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk00577, 544 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6832229 sequences Expectation_n fit: rho(ln(x))= 6.2957+/-0.000191; mu= 7.0501+/- 0.011 mean_var=105.3122+/-20.745, 0's: 39 Z-trim: 101 B-trim: 15 in 2/65 Lambda= 0.124978 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|68533093|dbj|BAE06101.1| CUGBP1 variant protein ( 544) 3546 650.0 4.5e-184 gi|168275618|dbj|BAG10529.1| CUG triplet repeat RN ( 512) 3340 612.8 6.5e-173 gi|123213335|emb|CAM15320.1| CUG triplet repeat, R ( 513) 3322 609.5 6.2e-172 gi|149022602|gb|EDL79496.1| CUG triplet repeat, RN ( 513) 3318 608.8 1e-171 gi|119588314|gb|EAW67908.1| CUG triplet repeat, RN ( 514) 3316 608.5 1.3e-171 gi|73982386|ref|XP_533186.2| PREDICTED: similar to ( 513) 3314 608.1 1.7e-171 gi|75070672|sp|Q5R995.1|CELF1_PONAB CUG-BP- and ET ( 513) 3311 607.6 2.4e-171 gi|126332652|ref|XP_001364287.1| PREDICTED: simila ( 513) 3293 604.3 2.3e-170 gi|149632715|ref|XP_001509363.1| PREDICTED: simila ( 513) 3270 600.2 4.1e-169 gi|148695568|gb|EDL27515.1| CUG triplet repeat, RN ( 499) 3161 580.5 3.3e-163 gi|109106417|ref|XP_001106106.1| PREDICTED: CUG tr ( 485) 3158 580.0 4.7e-163 gi|17374605|sp|Q92879|CELF1_HUMAN CUG-BP- and ETR- ( 486) 3146 577.8 2.1e-162 gi|19857900|sp|P28659|CELF1_MOUSE CUG-BP- and ETR- ( 486) 3140 576.7 4.5e-162 gi|149022603|gb|EDL79497.1| CUG triplet repeat, RN ( 486) 3136 576.0 7.4e-162 gi|74150748|dbj|BAE25504.1| unnamed protein produc ( 486) 3134 575.6 9.5e-162 gi|119588312|gb|EAW67906.1| CUG triplet repeat, RN ( 487) 3134 575.6 9.5e-162 gi|74140245|dbj|BAE33820.1| unnamed protein produc ( 486) 3131 575.1 1.4e-161 gi|12852385|dbj|BAB29392.1| unnamed protein produc ( 487) 3128 574.5 2e-161 gi|81918148|sp|Q4QQT3|CELF1_RAT CUG-BP- and ETR-3- ( 487) 3124 573.8 3.3e-161 gi|154425935|gb|AAI51434.1| CUGBP1 protein [Bos ta ( 486) 3109 571.1 2.2e-160 gi|1518802|gb|AAC50895.1| CUG-BP/hNab50 [Homo sapi ( 482) 3103 570.0 4.5e-160 gi|8745539|gb|AAF78957.1|AF267535_1 CUG-binding pr ( 486) 3101 569.7 5.8e-160 gi|8745537|gb|AAF78956.1|AF267534_1 CUG-binding pr ( 483) 3091 567.9 2e-159 gi|194217895|ref|XP_001492139.2| PREDICTED: CUG tr ( 482) 3089 567.5 2.6e-159 gi|123213337|emb|CAM15322.1| CUG triplet repeat, R ( 483) 3085 566.8 4.3e-159 gi|145306680|gb|ABP57104.1| CUG binding protein 1 ( 487) 3063 562.8 6.8e-158 gi|152013389|sp|Q5F3T7|CELF1_CHICK CUG-BP- and ETR ( 489) 3045 559.6 6.4e-157 gi|194385764|dbj|BAG65257.1| unnamed protein produ ( 468) 3036 557.9 1.9e-156 gi|60098733|emb|CAH65197.1| hypothetical protein [ ( 485) 3002 551.8 1.4e-154 gi|109106413|ref|XP_001105822.1| PREDICTED: CUG tr ( 490) 2939 540.5 3.7e-151 gi|109106415|ref|XP_001105693.1| PREDICTED: CUG tr ( 499) 2916 536.3 6.6e-150 gi|123910258|sp|Q28HE9|CELF1_XENTR CUG-BP- and ETR ( 490) 2865 527.1 3.8e-147 gi|82227733|sp|O57406|CEL1A_XENLA CUG-BP- and ETR- ( 489) 2827 520.3 4.4e-145 gi|82237708|sp|Q6PF35|CEL1B_XENLA CUG-BP- and ETR- ( 489) 2808 516.9 4.7e-144 gi|12642586|gb|AAK00297.1|AF314172_1 BRUNOL2 [Mus ( 436) 2777 511.2 2.1e-142 gi|134152680|ref|NP_006552.3| CUG triplet repeat, ( 521) 2606 480.4 4.5e-133 gi|152013391|sp|Q5R8Y8.2|CELF2_PONAB CUG-BP- and E ( 508) 2577 475.2 1.7e-131 gi|81917931|sp|Q9Z0H4.1|CELF2_MOUSE CUG-BP- and ET ( 508) 2574 474.7 2.4e-131 gi|123232599|emb|CAM18813.1| CUG triplet repeat, R ( 526) 2574 474.7 2.5e-131 gi|134152710|ref|NP_001077055.1| CUG triplet repea ( 526) 2574 474.7 2.5e-131 gi|74227938|dbj|BAE37963.1| unnamed protein produc ( 520) 2573 474.5 2.8e-131 gi|14701777|gb|AAK72223.1| neuroplastoma apoptosis ( 484) 2565 473.0 7.2e-131 gi|73949074|ref|XP_849139.1| PREDICTED: similar to ( 484) 2563 472.7 9.3e-131 gi|55733179|emb|CAH93273.1| hypothetical protein [ ( 484) 2562 472.5 1e-130 gi|4249672|gb|AAD13763.1| apoptosis-related RNA bi ( 484) 2562 472.5 1e-130 gi|74209492|dbj|BAE23295.1| unnamed protein produc ( 524) 2555 471.3 2.7e-130 gi|194375526|dbj|BAG56708.1| unnamed protein produ ( 496) 2554 471.1 2.9e-130 gi|189054263|dbj|BAG36783.1| unnamed protein produ ( 509) 2553 470.9 3.4e-130 gi|3451291|emb|CAA09103.1| ETR-R3b protein [Rattus ( 532) 2552 470.7 3.9e-130 gi|14701786|gb|AAK72224.1| neuroplastoma apoptosis ( 509) 2550 470.3 4.9e-130 >>gi|68533093|dbj|BAE06101.1| CUGBP1 variant protein [Ho (544 aa) initn: 3546 init1: 3546 opt: 3546 Z-score: 3459.9 bits: 650.0 E(): 4.5e-184 Smith-Waterman score: 3546; 100.000% identity (100.000% similar) in 544 aa overlap (1-544:1-544) 10 20 30 40 50 60 fk0057 SQIFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 SQIFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKM 10 20 30 40 50 60 70 80 90 100 110 120 fk0057 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 70 80 90 100 110 120 130 140 150 160 170 180 fk0057 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNVEDRKLFIGMISKKCTEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 CFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNVEDRKLFIGMISKKCTEN 130 140 150 160 170 180 190 200 210 220 230 240 fk0057 DIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 DIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 190 200 210 220 230 240 250 260 270 280 290 300 fk0057 VKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 VKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSG 250 260 270 280 290 300 310 320 330 340 350 360 fk0057 NLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 NLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPS 310 320 330 340 350 360 370 380 390 400 410 420 fk0057 SSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 SSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQA 370 380 390 400 410 420 430 440 450 460 470 480 fk0057 YSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 YSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFM 430 440 450 460 470 480 490 500 510 520 530 540 fk0057 PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 490 500 510 520 530 540 fk0057 SKPY :::: gi|685 SKPY >>gi|168275618|dbj|BAG10529.1| CUG triplet repeat RNA-bi (512 aa) initn: 3340 init1: 3340 opt: 3340 Z-score: 3259.5 bits: 612.8 E(): 6.5e-173 Smith-Waterman score: 3340; 100.000% identity (100.000% similar) in 512 aa overlap (33-544:1-512) 10 20 30 40 50 60 fk0057 IFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNG :::::::::::::::::::::::::::::: gi|168 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNG 10 20 30 70 80 90 100 110 120 fk0057 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 40 50 60 70 80 90 130 140 150 160 170 180 fk0057 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNVEDRKLFIGMISKKCTENDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNVEDRKLFIGMISKKCTENDI 100 110 120 130 140 150 190 200 210 220 230 240 fk0057 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0057 FADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 FADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNL 220 230 240 250 260 270 310 320 330 340 350 360 fk0057 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSS 280 290 300 310 320 330 370 380 390 400 410 420 fk0057 SSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 SSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYS 340 350 360 370 380 390 430 440 450 460 470 480 fk0057 GIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 GIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPF 400 410 420 430 440 450 490 500 510 520 530 540 fk0057 GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 460 470 480 490 500 510 fk0057 PY :: gi|168 PY >>gi|123213335|emb|CAM15320.1| CUG triplet repeat, RNA b (513 aa) initn: 2441 init1: 2441 opt: 3322 Z-score: 3242.0 bits: 609.5 E(): 6.2e-172 Smith-Waterman score: 3322; 99.415% identity (99.805% similar) in 513 aa overlap (33-544:1-513) 10 20 30 40 50 60 fk0057 IFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNG :::::::::::::::::::::::::::::: gi|123 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNG 10 20 30 70 80 90 100 110 120 fk0057 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|123 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 40 50 60 70 80 90 130 140 150 160 170 180 fk0057 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-VEDRKLFIGMISKKCTEND :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: gi|123 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEND 100 110 120 130 140 150 190 200 210 220 230 240 fk0057 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|123 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVV 160 170 180 190 200 210 250 260 270 280 290 300 fk0057 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN 220 230 240 250 260 270 310 320 330 340 350 360 fk0057 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS 280 290 300 310 320 330 370 380 390 400 410 420 fk0057 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 340 350 360 370 380 390 430 440 450 460 470 480 fk0057 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 400 410 420 430 440 450 490 500 510 520 530 540 fk0057 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 460 470 480 490 500 510 fk0057 KPY ::: gi|123 KPY >>gi|149022602|gb|EDL79496.1| CUG triplet repeat, RNA bi (513 aa) initn: 2437 init1: 2437 opt: 3318 Z-score: 3238.1 bits: 608.8 E(): 1e-171 Smith-Waterman score: 3318; 99.220% identity (99.805% similar) in 513 aa overlap (33-544:1-513) 10 20 30 40 50 60 fk0057 IFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNG :::::::::::::::::::::::::::::: gi|149 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNG 10 20 30 70 80 90 100 110 120 fk0057 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|149 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCF 40 50 60 70 80 90 130 140 150 160 170 180 fk0057 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-VEDRKLFIGMISKKCTEND :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: gi|149 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEND 100 110 120 130 140 150 190 200 210 220 230 240 fk0057 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|149 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVV 160 170 180 190 200 210 250 260 270 280 290 300 fk0057 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|149 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTANSGN 220 230 240 250 260 270 310 320 330 340 350 360 fk0057 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS 280 290 300 310 320 330 370 380 390 400 410 420 fk0057 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 340 350 360 370 380 390 430 440 450 460 470 480 fk0057 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 400 410 420 430 440 450 490 500 510 520 530 540 fk0057 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 460 470 480 490 500 510 fk0057 KPY ::: gi|149 KPY >>gi|119588314|gb|EAW67908.1| CUG triplet repeat, RNA bi (514 aa) initn: 2235 init1: 1263 opt: 3316 Z-score: 3236.1 bits: 608.5 E(): 1.3e-171 Smith-Waterman score: 3316; 99.611% identity (99.611% similar) in 514 aa overlap (33-544:1-514) 10 20 30 40 50 60 fk0057 IFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNG :::::::::::::::::::::::::::::: gi|119 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNG 10 20 30 70 80 90 100 110 120 fk0057 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 40 50 60 70 80 90 130 140 150 160 170 180 fk0057 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-VEDRKLFIGMISKKCTEND :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: gi|119 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEND 100 110 120 130 140 150 190 200 210 220 230 240 fk0057 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 160 170 180 190 200 210 250 260 270 280 290 300 fk0057 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN 220 230 240 250 260 270 310 320 330 340 350 360 fk0057 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSS-GSSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|119 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSAGSSPS 280 290 300 310 320 330 370 380 390 400 410 420 fk0057 SSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQA 340 350 360 370 380 390 430 440 450 460 470 480 fk0057 YSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFM 400 410 420 430 440 450 490 500 510 520 530 540 fk0057 PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 460 470 480 490 500 510 fk0057 SKPY :::: gi|119 SKPY >>gi|73982386|ref|XP_533186.2| PREDICTED: similar to CUG (513 aa) initn: 2432 init1: 2432 opt: 3314 Z-score: 3234.2 bits: 608.1 E(): 1.7e-171 Smith-Waterman score: 3314; 99.415% identity (99.805% similar) in 513 aa overlap (33-544:1-513) 10 20 30 40 50 60 fk0057 IFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNG :::::::::::::::::::::::::::::: gi|739 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNG 10 20 30 70 80 90 100 110 120 fk0057 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 40 50 60 70 80 90 130 140 150 160 170 180 fk0057 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-VEDRKLFIGMISKKCTEND :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: gi|739 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEND 100 110 120 130 140 150 190 200 210 220 230 240 fk0057 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 160 170 180 190 200 210 250 260 270 280 290 300 fk0057 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN 220 230 240 250 260 270 310 320 330 340 350 360 fk0057 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS 280 290 300 310 320 330 370 380 390 400 410 420 fk0057 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY :::.:::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|739 SSSSSVNPIASLGALQTLAGATAGLNVSSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 340 350 360 370 380 390 430 440 450 460 470 480 fk0057 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 400 410 420 430 440 450 490 500 510 520 530 540 fk0057 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 460 470 480 490 500 510 fk0057 KPY ::: gi|739 KPY >>gi|75070672|sp|Q5R995.1|CELF1_PONAB CUG-BP- and ETR-3- (513 aa) initn: 2429 init1: 2429 opt: 3311 Z-score: 3231.3 bits: 607.6 E(): 2.4e-171 Smith-Waterman score: 3311; 99.415% identity (99.610% similar) in 513 aa overlap (33-544:1-513) 10 20 30 40 50 60 fk0057 IFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNG :::::::::::::::::::::::::::::: gi|750 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNG 10 20 30 70 80 90 100 110 120 fk0057 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 40 50 60 70 80 90 130 140 150 160 170 180 fk0057 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-VEDRKLFIGMISKKCTEND :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: gi|750 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEND 100 110 120 130 140 150 190 200 210 220 230 240 fk0057 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV ::::::::::::::::: ::::::::::.::::::::::::::::::::::::::::::: gi|750 IRVMFSSFGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 160 170 180 190 200 210 250 260 270 280 290 300 fk0057 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN 220 230 240 250 260 270 310 320 330 340 350 360 fk0057 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS 280 290 300 310 320 330 370 380 390 400 410 420 fk0057 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY 340 350 360 370 380 390 430 440 450 460 470 480 fk0057 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 400 410 420 430 440 450 490 500 510 520 530 540 fk0057 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 460 470 480 490 500 510 fk0057 KPY ::: gi|750 KPY >>gi|126332652|ref|XP_001364287.1| PREDICTED: similar to (513 aa) initn: 2423 init1: 2423 opt: 3293 Z-score: 3213.7 bits: 604.3 E(): 2.3e-170 Smith-Waterman score: 3293; 98.051% identity (99.805% similar) in 513 aa overlap (33-544:1-513) 10 20 30 40 50 60 fk0057 IFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNG ::::::::::::::::::::.::::::::: gi|126 MAAFKLDFLPEMMVDHCSLNASPVSKKMNG 10 20 30 70 80 90 100 110 120 fk0057 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF :::::::::::.::::::::::.::::::::::::::::::::::::::::::::::::: gi|126 TLDHPDQPDLDSIKMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 40 50 60 70 80 90 130 140 150 160 170 180 fk0057 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-VEDRKLFIGMISKKCTEND ::::::::::::::::::::.::::::::::::::::::: :::::::::::::::.::: gi|126 VTFYTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNEND 100 110 120 130 140 150 190 200 210 220 230 240 fk0057 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|126 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVV 160 170 180 190 200 210 250 260 270 280 290 300 fk0057 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN 220 230 240 250 260 270 310 320 330 340 350 360 fk0057 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 LNTLGSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS 280 290 300 310 320 330 370 380 390 400 410 420 fk0057 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY ::::::::.:::::::::::::::::::::::::::::::::.::::::::::::::::: gi|126 SSSNSVNPMASLGALQTLAGATAGLNVGSLAGMAALNGGLGSGGLSNGTGSTMEALTQAY 340 350 360 370 380 390 430 440 450 460 470 480 fk0057 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 400 410 420 430 440 450 490 500 510 520 530 540 fk0057 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 460 470 480 490 500 510 fk0057 KPY ::: gi|126 KPY >>gi|149632715|ref|XP_001509363.1| PREDICTED: similar to (513 aa) initn: 2412 init1: 2412 opt: 3270 Z-score: 3191.3 bits: 600.2 E(): 4.1e-169 Smith-Waterman score: 3270; 97.661% identity (99.610% similar) in 513 aa overlap (33-544:1-513) 10 20 30 40 50 60 fk0057 IFEEAKAVCICGSDKCSKLISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNG :::::::::::::::.:::: ::.:::::: gi|149 MAAFKLDFLPEMMVDRCSLNVSPLSKKMNG 10 20 30 70 80 90 100 110 120 fk0057 TLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|149 TLDHPDQPDLDAIKMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCF 40 50 60 70 80 90 130 140 150 160 170 180 fk0057 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN-VEDRKLFIGMISKKCTEND :::::::::::::::::::::::::::::::::::::::: :::::::::::::::.::: gi|149 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNEND 100 110 120 130 140 150 190 200 210 220 230 240 fk0057 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::.:: gi|149 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRSMAQTAIKAMHQAQTMEGCSSPIVV 160 170 180 190 200 210 250 260 270 280 290 300 fk0057 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGN 220 230 240 250 260 270 310 320 330 340 350 360 fk0057 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSS ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|149 LNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTSALTTSSSPLSVLTSSGSSPSS 280 290 300 310 320 330 370 380 390 400 410 420 fk0057 SSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAY ::::::::.:::::::::::::::::::::::::::::::::.::::::::::::::::: gi|149 SSSNSVNPMASLGALQTLAGATAGLNVGSLAGMAALNGGLGSGGLSNGTGSTMEALTQAY 340 350 360 370 380 390 430 440 450 460 470 480 fk0057 SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|149 SGIQQYAAAALPTLYNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMP 400 410 420 430 440 450 490 500 510 520 530 540 fk0057 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 460 470 480 490 500 510 fk0057 KPY ::: gi|149 KPY >>gi|148695568|gb|EDL27515.1| CUG triplet repeat, RNA bi (499 aa) initn: 2441 init1: 2441 opt: 3161 Z-score: 3085.3 bits: 580.5 E(): 3.3e-163 Smith-Waterman score: 3161; 98.586% identity (98.990% similar) in 495 aa overlap (51-544:5-499) 30 40 50 60 70 80 fk0057 LISLASEGESEVMAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVG : : :::::::::::::::::::::::: gi|148 GSGGLRCSRCSKKMNGTLDHPDQPDLDAIKMFVG 10 20 30 90 100 110 120 130 140 fk0057 QVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|148 QVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN 40 50 60 70 80 90 150 160 170 180 190 fk0057 MKVLPGMHHPIQMKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: gi|148 MKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR 100 110 120 130 140 150 200 210 220 230 240 250 fk0057 GPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQL :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|148 GPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQL 160 170 180 190 200 210 260 270 280 290 300 310 fk0057 QQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQL 220 230 240 250 260 270 320 330 340 350 360 370 fk0057 QNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTL 280 290 300 310 320 330 380 390 400 410 420 430 fk0057 AGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQN 340 350 360 370 380 390 440 450 460 470 480 490 fk0057 LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS 400 410 420 430 440 450 500 510 520 530 540 fk0057 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY ::::::::::::::::::::::::::::::::::::::::::::: gi|148 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 460 470 480 490 544 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 21:58:58 2008 done: Sun Aug 10 22:01:15 2008 Total Scan time: 915.080 Total Display time: 0.180 Function used was FASTA [version 34.26.5 April 26, 2007]