hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-22011665/chunk_1/iprscan-20080810-22011665.nocrc
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Query sequence: fk00577
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 246.8    1.8e-69   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/3      76   154 ..     1   121 []    71.9  8.2e-17
SM00360    2/3     167   242 ..     1   121 []    84.4  1.4e-20
SM00360    3/3     460   533 ..     1   121 []    90.5    2e-22

Alignments of top-scoring domains:
SM00360: domain 1 of 3, from 76 to 154: score 71.9, E = 8.2e-17
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      + fVg +  p +++e+dLrelF              +++G v ++ +
     fk00577    76    KMFVGQV--PRTWSEKDLRELF--------------EQYGAVYEINV 106  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +rd+                    ++  +skG++FV+F ++ +A  A  +
     fk00577   107 LRDRS-------------------QNPPQSKGCCFVTFYTRKAALEA--Q 135  

                   ealnaskGkeledgGrptlglrVe<-*
                   +al++ k  +   + +p   ++ +   
     fk00577   136 NALHNMKVLPG--MHHP---IQMK    154  

SM00360: domain 2 of 3, from 167 to 242: score 84.4, E = 1.4e-20
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lf+g +  ++++te d+r +F              s fG ++++ri
     fk00577   167    KLFIGMI--SKKCTENDIRVMF--------------SSFGQIEECRI 197  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +r +d                      G s+G+aFV+F +++ A+ A  i
     fk00577   198 LRGPD----------------------GLSRGCAFVTFTTRAMAQTA--I 223  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a++    +e   +  p   + V+   
     fk00577   224 KAMHQAQTMEG--CSSP---MVVK    242  

SM00360: domain 3 of 3, from 460 to 533: score 90.5, E = 2e-22
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lf+  L  p +  ++dL ++F               +fG+vvs+++
     fk00577   460    NLFIYHL--PQEFGDQDLLQMF--------------MPFGNVVSAKV 490  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + dk+                     T+ sk+f+FV ++++ +A++A  i
     fk00577   491 FIDKQ---------------------TNLSKCFGFVSYDNPVSAQAA--I 517  

                   ealnaskGkeledgGrptlglrVe<-*
                   + +n   G+++  g ++   l+V+   
     fk00577   518 QSMN---GFQI--GMKR---LKVQ    533  

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