hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-11023699/chunk_1/iprscan-20090618-11023699.nocrc
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Query sequence: fk00640
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF02931.14.ls  Neurotransmitter-gated ion-channel lig   282.1    9.7e-82   1
PF02931.14.fs  Neurotransmitter-gated ion-channel lig   280.3    3.4e-81   1
PF02932.6.fs   Neurotransmitter-gated ion-channel tra   178.4    9.2e-54   2
PF02932.6.ls   Neurotransmitter-gated ion-channel tra   175.8    9.6e-50   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF02931.14.fs    1/1      72   282 ..     1   246 []   280.3  3.4e-81
PF02931.14.ls    1/1      72   282 ..     1   246 []   282.1  9.7e-82
PF02932.6.fs     1/2     289   368 ..     1    80 [.   152.1  7.5e-46
PF02932.6.ls     1/1     289   466 ..     1   289 []   175.8  9.6e-50
PF02932.6.fs     2/2     433   466 ..   256   289 .]    26.3  5.7e-08

Alignments of top-scoring domains:
PF02931.14.fs: domain 1 of 1, from 72 to 282: score 280.3, E = 3.4e-81
                   *->eerLlddLlennvsgYdkrvRPvengsdlppvtVsvglylqqiidVd
                       +  ld+L+    sgYd r+RP+ ++++ p v+V+ +++++++++V 
     fk00640    72    PSDFLDKLMGR-TSGYDARIRPN-FKGP-P-VNVTCNIFINSFGSVT 114  

                   EknqdlttnvwlrqqWtDerLaWdPedpDvlgdYggikslrlpsddEhdm
                   E ++d+ +n++lrqqW+D rLa+   +      Y+  +sl l+++    m
     fk00640   115 ETTMDYRVNIFLRQQWNDSRLAYS--E------YP-DDSLDLDPS----M 151  

                   lkkIWlPDivLyNsnadgnhdvttpntnvrvypgkkdGtVlwspPaiyks
                   l++IW+PD ++ N++ + +hdvtt+n ++r++    +G+Vl+s+++++++
     fk00640   152 LDSIWKPDLFFANEKGANFHDVTTDNKLLRISK---NGKVLYSIRLTLTL 198  

                   sCpidvtyFPFDqQnCslkFgSwtYngnevdLrwkddtpvvekeeidLsd
                   sCp+d+++FP+D+Q+C++ ++S++Y++n+++++w +d pv + e+  L++
     fk00640   199 SCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQ 248  

                   FtengeWdildvpakrnekpygccseltsagLnlvYpditfylvlrRkp<
                   F++ +e ++ +  ++++++ +g +++ +            ++++l R++ 
     fk00640   249 FILKEEKELGY--CTKHYN-TGKFTCIE------------VKFHLERQM  282  

                   -*
                     
     fk00640     -    -    

PF02931.14.ls: domain 1 of 1, from 72 to 282: score 282.1, E = 9.7e-82
                   *->eerLlddLlennvsgYdkrvRPvengsdlppvtVsvglylqqiidVd
                       +  ld+L+    sgYd r+RP+ ++++ p v+V+ +++++++++V 
     fk00640    72    PSDFLDKLMGR-TSGYDARIRPN-FKGP-P-VNVTCNIFINSFGSVT 114  

                   EknqdlttnvwlrqqWtDerLaWdPedpDvlgdYggikslrlpsddEhdm
                   E ++d+ +n++lrqqW+D rLa+   +      Y+  +sl l+++    m
     fk00640   115 ETTMDYRVNIFLRQQWNDSRLAYS--E------YP-DDSLDLDPS----M 151  

                   lkkIWlPDivLyNsnadgnhdvttpntnvrvypgkkdGtVlwspPaiyks
                   l++IW+PD ++ N++ + +hdvtt+n ++r++    +G+Vl+s+++++++
     fk00640   152 LDSIWKPDLFFANEKGANFHDVTTDNKLLRISK---NGKVLYSIRLTLTL 198  

                   sCpidvtyFPFDqQnCslkFgSwtYngnevdLrwkddtpvvekeeidLsd
                   sCp+d+++FP+D+Q+C++ ++S++Y++n+++++w +d pv + e+  L++
     fk00640   199 SCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQ 248  

                   FtengeWdildvpakrnekpygccseltsagLnlvYpditfylvlrRkp<
                   F++ +e ++ +  ++++++ +g +++ +            ++++l R++ 
     fk00640   249 FILKEEKELGY--CTKHYN-TGKFTCIE------------VKFHLERQM  282  

                   -*
                     
     fk00640     -    -    

PF02932.6.fs: domain 1 of 2, from 289 to 368: score 152.1, E = 7.5e-46
                   *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
                      ++iP++LI++Lsw++F++++Da P++v+LgI+++Lt+T+ + + r++
     fk00640   289    MYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRAS 335  

                   lPkTSlvvPLigkYllFtMfvvtasieyavvvl<-*
                   lPk+S+v++++++++++++fv++a++eya+v++   
     fk00640   336 LPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNF    368  

PF02932.6.ls: domain 1 of 1, from 289 to 466: score 175.8, E = 9.6e-50
                   *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
                      ++iP++LI++Lsw++F++++Da P++v+LgI+++Lt+T+ + + r++
     fk00640   289    MYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRAS 335  

                   lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmppwv
                   lPk+S+v++++++++++++fv++a++eya+v++        ++Hk   ++
     fk00640   336 LPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVS------RQHKEFLRL 379  

                   rklfLerklPrllfmkrpneslsepnskrpllrrpgssssgaslkaeeys
                   r           ++ kr n+                          ee++
     fk00640   380 R-----------RRQKRQNK--------------------------EEDV 392  

                   lskprselmfekgspeleeylcaHlqgardgldssgtakggrgkthpCkc
                    + +r  +++               +g+ ++l+ +++             
     fk00640   393 TRESRFNFSG---------------YGMGHCLQVKDGT------------ 415  

                   ckskggpvgesggslsplslkrlspelkkaiegvsrfIaehvgpkaavka
                                            ++k ++       a+          
     fk00640   416 -------------------------AVKATP-------ANP--------- 424  

                   wlrskdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<-*
                   + ++ ++ d++k+ ++ +a+ ID +++++Fp++f++++++y+   
     fk00640   425 LPQPPKDGDAIKKKFVDRAKRIDTISRAAFPLAFLIFNIFYW    466  

PF02932.6.fs: domain 2 of 2, from 433 to 466: score 26.3, E = 5.7e-08
                   *->dsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<-*
                      d++k+ ++ +a+ ID +++++Fp++f++++++y+   
     fk00640   433    DAIKKKFVDRAKRIDTISRAAFPLAFLIFNIFYW    466  

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