hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-11023699/chunk_1/iprscan-20090618-11023699.nocrc
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Query sequence: fk00640
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00860 LIC: Cation transporter family protein         719.2   9.1e-214   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00860   1/1      37   469 ..     1   550 []   719.2 9.1e-214

Alignments of top-scoring domains:
TIGR00860: domain 1 of 1, from 37 to 469: score 719.2, E = 9.1e-214
                   *->Mwlvqilslyllalllfaslaavslaef...qaksnlkeveprrlld
                      ++   +   ++l++  f    +  +  ++++q   +l++     +ld
     fk00640    37    LTALFA---FFLETNHFRTAFCKDHDSRsgkQPSQTLSPSD---FLD 77   

                   eLLkggsGYdirvRPvgnnksWPDfggkPvtVsinlilaSIdsiDEvNMd
                   +L++++sGYd+r+RP+        f g+Pv+V++n++++S++s+ E++Md
     fk00640    78 KLMGRTSGYDARIRPN--------FKGPPVNVTCNIFINSFGSVTETTMD 119  

                   YTtniwlrqeWtDeRLqwnpeedsdtevypgvtlvrtpdgdfAesIWvPD
                   Y++ni+lrq+W+D RL++ +++d+    + ++++++++      sIW+PD
     fk00640   120 YRVNIFLRQQWNDSRLAYSEYPDD----SLDLDPSMLD------SIWKPD 159  

                   iffaNeKdarfhgitetNvlvRihpnGsvlYsiRltltlACpMDLknfPl
                   +ffaNeK+a+fh++t++N+l+Ri++nG vlYsiRltltl+CpMDLknfP+
     fk00640   160 LFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPM 209  

                   DvQnCslefeSygYTtnDikleWkeqpgaVqvdeslfislPeFeLlgvyg
                   DvQ+C++++eS+gYT+nD+++eW  + g+Vqv+e+l  +lP+F+L+++++
     fk00640   210 DVQTCTMQLESFGYTMNDLIFEWLSD-GPVQVAEGL--TLPQFILKEEKE 256  

                   trycftsetntGeYpclklsfvLrRrilYYllqLYIPSillviLSwVSFW
                   + yc t+++ntG+++c+++ f+L+R+++YYl+q+YIPS+l+viLSwVSFW
     fk00640   257 LGYC-TKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFW 305  

                   LpkDAsgARVsLGITtLLTMTTfssgvresLPavSdyvKAIDvYlvvClv
                   +++DA++ARV+LGITt+LTMTT+ssg+r+sLP+vS yvKAID++++vCl+
     fk00640   306 INMDAAPARVALGITTVLTMTTQSSGSRASLPKVS-YVKAIDIWMAVCLL 354  

                   FVflALLEyafVnyvhhkksaqkkPmPkWlrhlllercar.rlckqepge
                   FVf+ALLEya+Vn+v+++     +      ++ l+ r++++r++k+e+ +
     fk00640   355 FVFAALLEYAAVNFVSRQ-----H------KEFLRLRRRQkRQNKEEDVT 393  

                   dyrrpaldtaekrddlssvemrpkkggppsngnlLYIgnqgLegvHCPTp
                   + +r++++ ++        +++ k+g                +       
     fk00640   394 RESRFNFSGYG-----MGHCLQVKDG----------------T------- 415  

                   DSGVvCGklaCskterqallhsppPseaqytksystrhGYiPsvlRslal
                               +++  a+  ++pP+++                      
     fk00640   416 -----------AVKATPANPLPQPPKDG---------------------- 432  

                   agileevRyIlhhlrkraeseevvrdwkfrakvIDklsrmaFplvfllFN
                                        +++++++ rak+ID +sr aFpl+fl+FN
     fk00640   433 --------------------DAIKKKFVDRAKRIDTISRAAFPLAFLIFN 462  

                   ilywtvY<-*
                   i+yw++Y   
     fk00640   463 IFYWITY    469  

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