hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-22130875/chunk_1/iprscan-20080810-22130875.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk00731 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01071.10.ls Phosphoribosylglycinamide synthetase, 497.0 2e-146 1 PF01071.10.fs Phosphoribosylglycinamide synthetase, 495.1 7.6e-146 1 PF00551.9.ls Formyl transferase 283.4 4.1e-82 1 PF00551.9.fs Formyl transferase 281.5 1.5e-81 1 PF00586.14.ls AIR synthase related protein, N-termin 257.9 1.9e-74 1 PF00586.14.fs AIR synthase related protein, N-termin 256.1 6.7e-74 1 PF02844.6.ls Phosphoribosylglycinamide synthetase, 230.8 2.8e-66 1 PF02844.6.fs Phosphoribosylglycinamide synthetase, 228.8 1.1e-65 1 PF02769.12.ls AIR synthase related protein, C-termin 200.1 4.7e-57 1 PF02843.7.fs Phosphoribosylglycinamide synthetase, 187.8 1e-56 1 PF02769.12.fs AIR synthase related protein, C-termin 198.2 1.8e-56 1 PF02843.7.ls Phosphoribosylglycinamide synthetase, 189.8 6.2e-54 1 PF02222.12.fs ATP-grasp domain 15.6 0.00011 1 PF02222.12.ls ATP-grasp domain -59.9 0.0015 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02844.6.ls 1/1 39 140 .. 1 108 [] 230.8 2.8e-66 PF02844.6.fs 1/1 39 140 .. 1 108 [] 228.8 1.1e-65 PF01071.10.fs 1/1 141 334 .. 1 208 [] 495.1 7.6e-146 PF01071.10.ls 1/1 141 334 .. 1 208 [] 497.0 2e-146 PF02222.12.fs 1/1 142 224 .. 1 84 [. 15.6 0.00011 PF02222.12.ls 1/1 142 327 .. 1 191 [] -59.9 0.0015 PF02843.7.ls 1/1 369 462 .. 1 95 [] 189.8 6.2e-54 PF02843.7.fs 1/1 369 462 .. 1 95 [] 187.8 1e-56 PF00586.14.fs 1/1 469 630 .. 1 191 [] 256.1 6.7e-74 PF00586.14.ls 1/1 469 630 .. 1 191 [] 257.9 1.9e-74 PF02769.12.ls 1/1 642 813 .. 1 193 [] 200.1 4.7e-57 PF02769.12.fs 1/1 642 813 .. 1 193 [] 198.2 1.8e-56 PF00551.9.ls 1/1 844 1024 .. 1 198 [] 283.4 4.1e-82 PF00551.9.fs 1/1 844 1024 .. 1 198 [] 281.5 1.5e-81 Alignments of top-scoring domains: PF02844.6.ls: domain 1 of 1, from 39 to 140: score 230.8, E = 2.8e-66 *->mkVLvIGsGGREHALAwkLaQSplVkkvyvAPGkNgGtarleKcskl +VL+IGsGGREH+LAwkLaQS++Vk+v+vAPG N+Gta++eK + fk00731 39 ARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPG-NAGTACSEK---I 81 envailakvtDfealveFAkkkkidLVvvGPEaPLvlGlvDaLeaaGIpv +n ai+ ++D+ al++F+k+kki +VvvGPEaPL++G+v++L++aG+++ fk00731 82 SNTAIS--ISDHTALAQFCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQC 129 FGPskaAAqLE<-* FGP+++AAqLE fk00731 130 FGPTAEAAQLE 140 PF02844.6.fs: domain 1 of 1, from 39 to 140: score 228.8, E = 1.1e-65 *->mkVLvIGsGGREHALAwkLaQSplVkkvyvAPGkNgGtarleKcskl +VL+IGsGGREH+LAwkLaQS++Vk+v+vAPG N+Gta++eK + fk00731 39 ARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPG-NAGTACSEK---I 81 envailakvtDfealveFAkkkkidLVvvGPEaPLvlGlvDaLeaaGIpv +n ai+ ++D+ al++F+k+kki +VvvGPEaPL++G+v++L++aG+++ fk00731 82 SNTAIS--ISDHTALAQFCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQC 129 FGPskaAAqLE<-* FGP+++AAqLE fk00731 130 FGPTAEAAQLE 140 PF01071.10.fs: domain 1 of 1, from 141 to 334: score 495.1, E = 7.6e-146 *->gSKsFaKdFmkrhgIPTAleYetFtdpeeAksyiqeagapaDilVVK +SK FaK+Fm+rhgIPTA ++++Ft peeA+s+i +a++pa lVVK fk00731 141 SSKRFAKEFMDRHGIPTA-QWKAFTKPEEACSFILSADFPA--LVVK 184 ADGLAAGKGViVaGEqLktneEAikavdeiledkkFGeAGetVVIEEfLe A+GLAAGKGViVa k++eEA+kav+ei+++k+FG AGet+VIEE+L+ fk00731 185 ASGLAAGKGVIVA----KSKEEACKAVQEIMQEKAFGAAGETIVIEELLD 230 GeEvSvlAfvDGktviplppAQDHKRlgeGDtGpNTGGMGAYsdDgPaPv GeEvS+l+f+DGktv+p+ppAQDHKRl+eGD GpNTGGMGAY+ PaP+ fk00731 231 GEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYC---PAPQ 277 itpelleriketIlqPTvdglrkEgipykGvLYAGlMLtekdGeLiPkVL ++++ll +ik+t+lq+Tvdg+++Eg+py+G+LYAG+MLt k+G PkVL fk00731 278 VSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLT-KNG---PKVL 323 EFNcRFGDPET<-* EFNcRFGDPE+ fk00731 324 EFNCRFGDPEC 334 PF01071.10.ls: domain 1 of 1, from 141 to 334: score 497.0, E = 2e-146 *->gSKsFaKdFmkrhgIPTAleYetFtdpeeAksyiqeagapaDilVVK +SK FaK+Fm+rhgIPTA ++++Ft peeA+s+i +a++pa lVVK fk00731 141 SSKRFAKEFMDRHGIPTA-QWKAFTKPEEACSFILSADFPA--LVVK 184 ADGLAAGKGViVaGEqLktneEAikavdeiledkkFGeAGetVVIEEfLe A+GLAAGKGViVa k++eEA+kav+ei+++k+FG AGet+VIEE+L+ fk00731 185 ASGLAAGKGVIVA----KSKEEACKAVQEIMQEKAFGAAGETIVIEELLD 230 GeEvSvlAfvDGktviplppAQDHKRlgeGDtGpNTGGMGAYsdDgPaPv GeEvS+l+f+DGktv+p+ppAQDHKRl+eGD GpNTGGMGAY+ PaP+ fk00731 231 GEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYC---PAPQ 277 itpelleriketIlqPTvdglrkEgipykGvLYAGlMLtekdGeLiPkVL ++++ll +ik+t+lq+Tvdg+++Eg+py+G+LYAG+MLt k+G PkVL fk00731 278 VSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLT-KNG---PKVL 323 EFNcRFGDPET<-* EFNcRFGDPE+ fk00731 324 EFNCRFGDPEC 334 PF02222.12.fs: domain 1 of 1, from 142 to 224: score 15.6, E = 0.00011 *->DRlvqkellAkelGlptprfaaiesleEelkeaaqelgfPv.VlKar + + ke+ + +G+pt+++ a + e e+ + + +fP+ V+Ka+ fk00731 142 SKRFAKEFM-DRHGIPTAQWKAFTKPE-EACSFILSADFPAlVVKAS 186 rgGYDGKGqyvirseadlqqaleelkq.GarggggpliV<-* ++ GKG+ v++s++++ +a++e +q++a g +g+ iV fk00731 187 GLA-AGKGVIVAKSKEEACKAVQEIMQeKAFGAAGETIV 224 PF02222.12.ls: domain 1 of 1, from 142 to 327: score -59.9, E = 0.0015 *->DRlvqkellAkelGlptprfaaiesleEelkeaaqelgfPv.VlKar + + ke+ + +G+pt+++ a + e e+ + + +fP+ V+Ka+ fk00731 142 SKRFAKEFM-DRHGIPTAQWKAFTKPE-EACSFILSADFPAlVVKAS 186 rgGYDGKGqyvirseadlqqaleelkq.Ga.rggggpliVEefVpFdrEl ++ GKG+ v++s++++ +a++e +q++a ++ g+ +++Ee + E+ fk00731 187 GLA-AGKGVIVAKSKEEACKAVQEIMQeKAfGAAGETIVIEELLD-GEEV 234 SvlvvRsPsvdGetafYPvvetiqed...........GicrlsvaPapip S+l + dG+t+++ ++ ++ +++++++++G ++ aP+ ++ fk00731 235 SCLC----FTDGKTVAPMPPAQDHKRllegdggpntgGMGAYCPAPQ-VS 279 daqqaqAaeiak.riadeL.....ggvGvfaVElFvtaedGdell.vNEl +++ ++++++ +r +d ++++++++G++ +t ++G ++l++N fk00731 280 NDLLLKIKDTVLqRTVDGMqqegtPYTGILYAGIMLT-KNGPKVLeFN-- 326 APRPHNSGHwTLdga<-* + fk00731 327 --------------C 327 PF02843.7.ls: domain 1 of 1, from 369 to 462: score 189.8, E = 6.2e-54 *->aAVgVVlAsgGYPesyrKGdeItglpeaedetgkVFHAGTaleddGk A++VV+As+GYP++y+KG eItg+pea++ + +VFHAGTal+ +Gk fk00731 369 TALTVVMASKGYPGDYTKGVEITGFPEAQALGLEVFHAGTALK-NGK 414 vvTnGGRVLaVtAlgddLeeArelAykavkqIkFdGsfyRKDIGyrAl<- vvT+GGRVLaVtA+ ++L +A e+A k++++IkF+G +yRKDIG+rA+ fk00731 415 VVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKDIGFRAI 462 * fk00731 - - PF02843.7.fs: domain 1 of 1, from 369 to 462: score 187.8, E = 1e-56 *->aAVgVVlAsgGYPesyrKGdeItglpeaedetgkVFHAGTaleddGk A++VV+As+GYP++y+KG eItg+pea++ + +VFHAGTal+ +Gk fk00731 369 TALTVVMASKGYPGDYTKGVEITGFPEAQALGLEVFHAGTALK-NGK 414 vvTnGGRVLaVtAlgddLeeArelAykavkqIkFdGsfyRKDIGyrAl<- vvT+GGRVLaVtA+ ++L +A e+A k++++IkF+G +yRKDIG+rA+ fk00731 415 VVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKDIGFRAI 462 * fk00731 - - PF00586.14.fs: domain 1 of 1, from 469 to 630: score 256.1, E = 6.7e-74 *->dsltyksagvdgdagkslvqlikelykstrrpgvisgtlvapGgdag +sltyk++gvd++ag+ lv++i +l+k+t+r+g+ l Gg+ag fk00731 469 RSLTYKESGVDIAAGNMLVKKIQPLAKATSRSGCK-VDL---GGFAG 511 vidlkdl.yedpgLvfttDghGTKLviapsavdpytgGadaVagtvnDla ++dlk+++++dp+L+++tDg+GTKL+ia+++++++t+G+d+Va++vnD++ fk00731 512 LFDLKAAgFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDIL 561 amGrGAePlalldylafGegldpevlqPwEdfgPhiaarivkeeavkGia a+G AePl++ldy+++G+ ld+ v +++v+ Gia fk00731 562 AQG--AEPLFFLDYFSCGK-LDLSVT-----------EAVVA-----GIA 592 dgcneaGvplvGGYfrleTavmpgtlneydgvfpdlaggcvGive<-* +c +aG++l+GG eTa+mp+ + y ++++dlag++vG++e fk00731 593 KACGKAGCALLGG----ETAEMPD-M--YPPGEYDLAGFAVGAME 630 PF00586.14.ls: domain 1 of 1, from 469 to 630: score 257.9, E = 1.9e-74 *->dsltyksagvdgdagkslvqlikelykstrrpgvisgtlvapGgdag +sltyk++gvd++ag+ lv++i +l+k+t+r+g+ l Gg+ag fk00731 469 RSLTYKESGVDIAAGNMLVKKIQPLAKATSRSGCK-VDL---GGFAG 511 vidlkdl.yedpgLvfttDghGTKLviapsavdpytgGadaVagtvnDla ++dlk+++++dp+L+++tDg+GTKL+ia+++++++t+G+d+Va++vnD++ fk00731 512 LFDLKAAgFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDIL 561 amGrGAePlalldylafGegldpevlqPwEdfgPhiaarivkeeavkGia a+G AePl++ldy+++G+ ld+ v +++v+ Gia fk00731 562 AQG--AEPLFFLDYFSCGK-LDLSVT-----------EAVVA-----GIA 592 dgcneaGvplvGGYfrleTavmpgtlneydgvfpdlaggcvGive<-* +c +aG++l+GG eTa+mp+ + y ++++dlag++vG++e fk00731 593 KACGKAGCALLGG----ETAEMPD-M--YPPGEYDLAGFAVGAME 630 PF02769.12.ls: domain 1 of 1, from 642 to 813: score 200.1, E = 4.7e-57 *->kpGDvlillgsttkktGrsGlhGnglslvrklleesglpdsde.per +GDv+++++s sGlh+ng+slvrk+ + s l +s++ p++ fk00731 642 TEGDVVVGIAS-------SGLHSNGFSLVRKIVAKSSLQYSSPaPDG 681 pavqitlgdplleptliyvvlllaalgetgglvkamhDitgGGLagalaE +++q tlgd+ll+pt+iy ll++l++ g+vka ++itgGGL++++++ fk00731 682 CGDQ-TLGDLLLTPTRIYSHSLLPVLRS--GHVKAFAHITGGGLLENIPR 728 mapagsglGaeidldrsaIPvweevpvfeelmkaGnrvlglemlfsenqG ++p + lG+++d+ +w+ ++vf++l+++G ++++em +++n+G fk00731 729 VLPEK--LGVDLDAQ-----TWRIPRVFSWLQQEGH-LSEEEMARTFNCG 770 rglvvvvpeeaveevlailekeglpsgkeaavIGeVtaggglevvvk<-* +g v+vv++e+ e++l+ + + + ea+vIG V+a+ +++ +vk fk00731 771 VGAVLVVSKEQTEQILRDIQQHKE----EAWVIGSVVARAEGSPRVK 813 PF02769.12.fs: domain 1 of 1, from 642 to 813: score 198.2, E = 1.8e-56 *->kpGDvlillgsttkktGrsGlhGnglslvrklleesglpdsde.per +GDv+++++s sGlh+ng+slvrk+ + s l +s++ p++ fk00731 642 TEGDVVVGIAS-------SGLHSNGFSLVRKIVAKSSLQYSSPaPDG 681 pavqitlgdplleptliyvvlllaalgetgglvkamhDitgGGLagalaE +++q tlgd+ll+pt+iy ll++l++ g+vka ++itgGGL++++++ fk00731 682 CGDQ-TLGDLLLTPTRIYSHSLLPVLRS--GHVKAFAHITGGGLLENIPR 728 mapagsglGaeidldrsaIPvweevpvfeelmkaGnrvlglemlfsenqG ++p + lG+++d+ +w+ ++vf++l+++G ++++em +++n+G fk00731 729 VLPEK--LGVDLDAQ-----TWRIPRVFSWLQQEGH-LSEEEMARTFNCG 770 rglvvvvpeeaveevlailekeglpsgkeaavIGeVtaggglevvvk<-* +g v+vv++e+ e++l+ + + + ea+vIG V+a+ +++ +vk fk00731 771 VGAVLVVSKEQTEQILRDIQQHKE----EAWVIGSVVARAEGSPRVK 813 PF00551.9.ls: domain 1 of 1, from 844 to 1024: score 283.4, E = 4.1e-82 *->mkiavliSGtgsnlqalldalrkggheiiveivaVvsnkpkarGler ++avliSGtgsnlqal+d +r+ + + + i V+snk+ ++Gl + fk00731 844 ARVAVLISGTGSNLQALIDSTREPNSS--AQIDIVISNKAAVAGLDK 888 aeqagiptevfehknitkriikelalskftprdsqrdqeladslaalaaD ae+agipt+v+ hk +++r ++d++++ +l+++ D fk00731 889 AERAGIPTRVINHKL-------------YKNR-VEFDSAIDLVLEEFSID 924 livlAgymriLpkeflqafpgkiLNiHPSLLPrfrGaapiqrAleaGdke +++lAg+mriL+++f+q++ gk LNiHPSLLP f+G++++++Ale G+++ fk00731 925 IVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTV 974 tGvTvhfvdeelDtGpIlaQkavpilptddtsetlenrvaelEhkalpea tG+Tvhfv e +D+G I++Q+avp++ +dt+ tl++rv+ +Ehk++p a fk00731 975 TGCTVHFVAEDVDAGQIILQEAVPVKR-GDTVATLSERVKLAEHKIFPAA 1023 l<-* l fk00731 1024 L 1024 PF00551.9.fs: domain 1 of 1, from 844 to 1024: score 281.5, E = 1.5e-81 *->mkiavliSGtgsnlqalldalrkggheiiveivaVvsnkpkarGler ++avliSGtgsnlqal+d +r+ + + + i V+snk+ ++Gl + fk00731 844 ARVAVLISGTGSNLQALIDSTREPNSS--AQIDIVISNKAAVAGLDK 888 aeqagiptevfehknitkriikelalskftprdsqrdqeladslaalaaD ae+agipt+v+ hk +++r ++d++++ +l+++ D fk00731 889 AERAGIPTRVINHKL-------------YKNR-VEFDSAIDLVLEEFSID 924 livlAgymriLpkeflqafpgkiLNiHPSLLPrfrGaapiqrAleaGdke +++lAg+mriL+++f+q++ gk LNiHPSLLP f+G++++++Ale G+++ fk00731 925 IVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTV 974 tGvTvhfvdeelDtGpIlaQkavpilptddtsetlenrvaelEhkalpea tG+Tvhfv e +D+G I++Q+avp++ +dt+ tl++rv+ +Ehk++p a fk00731 975 TGCTVHFVAEDVDAGQIILQEAVPVKR-GDTVATLSERVKLAEHKIFPAA 1023 l<-* l fk00731 1024 L 1024 //