hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-22195618/chunk_1/iprscan-20080810-22195618.nocrc
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Query sequence: fk00733
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    126.9    5.4e-35   2
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     96.5    7.2e-26   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2       3    49 ..    26    74 .]    50.3  2.4e-13
PF00076.12.ls   1/2       3    49 ..     1    74 []    18.1   0.0028
PF00076.12.fs   2/2      86   151 ..     1    74 []    76.6    1e-20
PF00076.12.ls   2/2      86   151 ..     1    74 []    78.5    2e-20

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 3 to 49: score 50.3, E = 2.4e-13
                   *->esikivrDttretgrskGfaFVeFedeedAekAldalnGkelggrel
                      +++++v+D  ++tg+skG++FV F ++ dAe A+  + G+ lggr++
     fk00733     3    MDARVVKD--MATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRKI 47   

                   rv<-*
                   r+   
     fk00733    48 RT    49   

PF00076.12.ls: domain 1 of 2, from 3 to 49: score 18.1, E = 0.0028
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                                               +++++v+D  ++tg+skG++FV
     fk00733     3    -------------------------MDARVVKD--MATGKSKGYGFV 22   

                   eFedeedAekAldalnGkelggrelrv<-*
                    F ++ dAe A+  + G+ lggr++r+   
     fk00733    23 SFYNKLDAENAIVHMGGQWLGGRKIRT    49   

PF00076.12.fs: domain 2 of 2, from 86 to 151: score 76.6, E = 1e-20
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +++g++  ++t++  ++ Fs+fG+i++i++++         kG+ FV
     fk00733    86    VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--------KGYSFV 124  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F ++e+A++A+ + nG++++g+++++   
     fk00733   125 RFSTHESAAHAIVSVNGTTIEGHVVKC    151  

PF00076.12.ls: domain 2 of 2, from 86 to 151: score 78.5, E = 2e-20
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +++g++  ++t++  ++ Fs+fG+i++i++++         kG+ FV
     fk00733    86    VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--------KGYSFV 124  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F ++e+A++A+ + nG++++g+++++   
     fk00733   125 RFSTHESAAHAIVSVNGTTIEGHVVKC    151  

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