hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-22195618/chunk_1/iprscan-20080810-22195618.nocrc
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Query sequence: fk00733
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                  77.5    1.6e-18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2       1    50 [.     1   121 []     6.4        1
SM00360    2/2      85   152 ..     1   121 []    71.1  1.4e-16

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 1 to 50: score 6.4, E = 1
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                                         ++                      ++r+
     fk00733     1    -------------------QAM---------------------DARV 7    

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v+d                       TGkskG++FV F ++ dAe+A  i
     fk00733     8 VKDMA---------------------TGKSKGYGFVSFYNKLDAENA--I 34   

                   ealnaskGkeledgGrptlglrVe<-*
                    +++   G++l  gGr+   +r +   
     fk00733    35 VHMG---GQWL--GGRK---IRTN    50   

SM00360: domain 2 of 2, from 85 to 152: score 71.1, E = 1.4e-16
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t++ g++   +  t++ +r+ F              s+fG + ++r+
     fk00733    85    TVYCGGI--ASGLTDQLMRQTF--------------SPFGQIMEIRV 115  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +++                           kG+ FV+F+++e+A+ A  i
     fk00733   116 FPE---------------------------KGYSFVRFSTHESAAHA--I 136  

                   ealnaskGkeledgGrptlglrVe<-*
                      n   G+++  +G+    +++    
     fk00733   137 VSVN---GTTI--EGHV---VKCY    152  

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