hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-17115640/chunk_1/iprscan-20090630-17115640.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk00837s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08487.1.ls Vault protein inter-alpha-trypsin 192.5 9.4e-55 1 PF08487.1.fs Vault protein inter-alpha-trypsin 190.5 3.7e-54 1 PF00092.18.fs von Willebrand factor type A domain 81.9 1.2e-25 1 PF00092.18.ls von Willebrand factor type A domain 83.9 4.6e-22 1 PF06668.2.fs Inter-alpha-trypsin inhibitor heavy chain C- 65.0 8.5e-19 2 PF06668.2.ls Inter-alpha-trypsin inhibitor heavy chain C- 58.0 2.8e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08487.1.ls 1/1 59 173 .. 1 119 [] 192.5 9.4e-55 PF08487.1.fs 1/1 59 173 .. 1 119 [] 190.5 3.7e-54 PF00092.18.fs 1/1 307 490 .. 1 195 [] 81.9 1.2e-25 PF00092.18.ls 1/1 307 490 .. 1 195 [] 83.9 4.6e-22 PF06668.2.fs 1/2 727 857 .. 1 133 [. 60.5 1.7e-17 PF06668.2.ls 1/1 727 921 .. 1 191 [] 58.0 2.8e-14 Alignments of top-scoring domains: PF08487.1.ls: domain 1 of 1, from 59 to 173: score 192.5, E = 9.4e-55 *->ngvtiySlkVnstVtSRfAhtvVtsrvvNradesqEalFdvplPkkA +++++++++V+st++SR+A+t+V++r++Nra+e+q+++F++++P A fk00837s1 59 TKPLMTEFSVKSTIISRYAFTTVSCRMLNRASEDQDIEFQMQIPAAA 105 FItnFtmtIngktyvGeIKeKeeAqqlYekAvarGksAgLVrtsgrdmEq FItnFtm+I++k+y+GeI+e+e+++ + +k ++r+k+++ ++++g ++ fk00837s1 106 FITNFTMLIGDKVYQGEITEREKKSGDRVK-EKRNKTTEENGEKGTEI-- 152 FtvsVanVapnsKVtFeLtYeE<-* F++s ++++++K++F+L+YeE fk00837s1 153 FRASA-VIPSKDKAAFFLSYEE 173 PF08487.1.fs: domain 1 of 1, from 59 to 173: score 190.5, E = 3.7e-54 *->ngvtiySlkVnstVtSRfAhtvVtsrvvNradesqEalFdvplPkkA +++++++++V+st++SR+A+t+V++r++Nra+e+q+++F++++P A fk00837s1 59 TKPLMTEFSVKSTIISRYAFTTVSCRMLNRASEDQDIEFQMQIPAAA 105 FItnFtmtIngktyvGeIKeKeeAqqlYekAvarGksAgLVrtsgrdmEq FItnFtm+I++k+y+GeI+e+e+++ + +k ++r+k+++ ++++g ++ fk00837s1 106 FITNFTMLIGDKVYQGEITEREKKSGDRVK-EKRNKTTEENGEKGTEI-- 152 FtvsVanVapnsKVtFeLtYeE<-* F++s ++++++K++F+L+YeE fk00837s1 153 FRASA-VIPSKDKAAFFLSYEE 173 PF00092.18.fs: domain 1 of 1, from 307 to 490: score 81.9, E = 1.2e-25 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY ++vF+lD+S S+ + + +++ kd++ +++ +++ ++r++++ + fk00837s1 307 NVVFVLDSSASMVGTK-LRQTKDALFTILH----DLRPQDRFSIIGF 348 ssdvrtefsLndysskddllaav.lknlrylgGgTnNtgkALkyalenlf s++ +++ + + + d++ + +++GgT+ ++ AL+ a+++l+ fk00837s1 349 SNRIKVWKDHLISVTPDSIRDGKvYIHHMSPTGGTD-INGALQRAIRLLN 397 sstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkg + a s ++++ + ++++lTDGk++ g+ ++++ +++ + fk00837s1 398 KY-------VAHSGIgDRSVSLIVFLTDGKPTVGETHTlKILNNTREAAR 440 vgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqe + +f +G+G+dvd L++++ ++ g +v +++++ ql +++ fk00837s1 441 GQVCIFTIGIGNDVDFRLLEkLS--LENCGLTRRVHEEEDAGSQLIGFYD 488 ql<-* ++ fk00837s1 489 EI 490 PF00092.18.ls: domain 1 of 1, from 307 to 490: score 83.9, E = 4.6e-22 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY ++vF+lD+S S+ + + +++ kd++ +++ +++ ++r++++ + fk00837s1 307 NVVFVLDSSASMVGTK-LRQTKDALFTILH----DLRPQDRFSIIGF 348 ssdvrtefsLndysskddllaav.lknlrylgGgTnNtgkALkyalenlf s++ +++ + + + d++ + +++GgT+ ++ AL+ a+++l+ fk00837s1 349 SNRIKVWKDHLISVTPDSIRDGKvYIHHMSPTGGTD-INGALQRAIRLLN 397 sstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkg + a s ++++ + ++++lTDGk++ g+ ++++ +++ + fk00837s1 398 KY-------VAHSGIgDRSVSLIVFLTDGKPTVGETHTlKILNNTREAAR 440 vgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqe + +f +G+G+dvd L++++ ++ g +v +++++ ql +++ fk00837s1 441 GQVCIFTIGIGNDVDFRLLEkLS--LENCGLTRRVHEEEDAGSQLIGFYD 488 ql<-* ++ fk00837s1 489 EI 490 PF06668.2.fs: domain 1 of 2, from 727 to 857: score 60.5, E = 1.7e-17 *->eqGieVnGqligeKrarkkkkegKlstyFgklgvtfkkpd.lqvevt ++G++VnG lig+ +a +++++ K +ty ++ + + kp++ +e+t fk00837s1 727 DSGVTVNGELIGA-PAPPNGHK-KQRTYLRTITILINKPErSYLEIT 771 pEtItltrgrrssvysWkdtlfvvlpGlkmtidkeklLvvslpdevtfsv p ++ l g v+ +++v Gl +++ +++v+ + + f++ fk00837s1 772 PSRVILDGGD-RLVLPCNQSVVVGSWGLEVSVSANANVTVTIQGSIAFVI 820 LlhrVWKkhpvpqdfLglylpDtdrFSarvhGlLGQF<-* L h K p + Lg+y+ + +S++ hGlLGQF fk00837s1 821 LIHLYKKPAPFQRHHLGFYIANSEGLSSNCHGLLGQF 857 PF06668.2.ls: domain 1 of 1, from 727 to 921: score 58.0, E = 2.8e-14 *->eqGieVnGqligeKrarkkkkegKlstyFgklgvtfkkpd.lqvevt ++G++VnG lig+ +a +++++ K +ty ++ + + kp++ +e+t fk00837s1 727 DSGVTVNGELIGA-PAPPNGHK-KQRTYLRTITILINKPErSYLEIT 771 pEtItltrgrrssvysWkdtlfvvlpGlkmtidkeklLvvslpdevtfsv p ++ l g v+ +++v Gl +++ +++v+ + + f++ fk00837s1 772 PSRVILDGGD-RLVLPCNQSVVVGSWGLEVSVSANANVTVTIQGSIAFVI 820 LlhrVWKkhpvpqdfLglylpDtdrFSarvhGlLGQFy.qevdfevfdir L h K p + Lg+y+ + +S++ hGlLGQF +q+ ++ + fk00837s1 821 LIHLYKKPAPFQRHHLGFYIANSEGLSSNCHGLLGQFLnQDA--RLT-ED 867 P.GsDPtK...........PdatmeVkghdltVTRglqkDYrqDgvpGte P G +++ + +++P+a ++Vkgh+ +V +k Y G e fk00837s1 868 PaGPSQNLthplllqvgegPEAVLTVKGHQVPVVWKQRKIY-----NGEE 912 .vsCWfVhn<-* ++ CWf n fk00837s1 913 qIDCWFARN 921 //