hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-17115640/chunk_1/iprscan-20090630-17115640.nocrc
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Query sequence: fk00837s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00327                                                 100.8    1.6e-25   1
SM00609                                                  42.8    8.2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00609    1/1      56   173 ..     1   132 []    42.8  8.2e-09
SM00327    1/1     305   488 ..     1   193 []   100.8  1.6e-25

Alignments of top-scoring domains:
SM00609: domain 1 of 1, from 56 to 173: score 42.8, E = 8.2e-09
                   *->llakrglltaevngVplySlkVnskVtSRfAhtvVTsrvvNrapdpa
                       l   +l+t+          +V+s+++SR+A t V  r  Nra +  
   fk00837s1    56    RLKTKPLMTE---------FSVKSTIISRYAFTTVSCRMLNRASED- 92   

                   qevvFdvelPktAFISnFamTiDGktyvGei..KEKavAqkqYekAvaqG
                   q+  F++++P +AFI+nF+m i +k+y Gei+++EK  +    e    + 
   fk00837s1    93 QDIEFQMQIPAAAFITNFTMLIGDKVYQGEIteREKKSGDRVKE---KRN 139  

                   ktAgLVrasgrkmEqFtvsVGnvaPgsKVtFeLtYeE<-*
                   kt     ++g   E F+ s   ++ + K++F L YeE   
   fk00837s1   140 KTTEENGEKGT--EIFRASA-VIPSKDKAAFFLSYEE    173  

SM00327: domain 1 of 1, from 305 to 488: score 100.8, E = 1.6e-25
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld.gdrvglvqFssd
                      p++vvf+lD+S+Sm g ++ ++k+++ +++ +l++ dr+++++Fs++
   fk00837s1   305    PKNVVFVLDSSASMVGTKLRQTKDALfTILHDLRpQDRFSIIGFSNR 351  

                   vrvefpln....sqskdallealaslsykglkdyslgggTnlg.ALqyal
                    +v+ +   + +  s  + +  ++ +s+        +ggT++++ALq+a+
   fk00837s1   352 IKVWKDHLisvtPDSIRDGKVYIHHMSP--------TGGTDINgALQRAI 393  

                   enlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaak
                   + l++  a++ +g+       ++  +++++TDG+++ g++    il   +
   fk00837s1   394 RLLNKYVAHsGIGD-------RSVSLIVFLTDGKPTVGETHTLKILNNTR 436  

                   elkrsgvkvfvigvgna.de.elkeiasep.gehvffdvsdvedlpslld
                   e+ r  v +f+ig+gn+ d++ l++++ e+ g+        v + +++  
   fk00837s1   437 EAARGQVCIFTIGIGNDvDFrLLEKLSLENcGL-----TRRVHEEEDAGS 481  

                   llidlll<-*
                    li +     
   fk00837s1   482 QLIGFYD    488  

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