hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-22370793/chunk_1/iprscan-20080810-22370793.nocrc
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Query sequence: fk00861
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00386.12.ls C1q domain                                     179.9      6e-51   1
PF00386.12.fs C1q domain                                     178.0    2.2e-50   1
PF01391.8.fs Collagen triple helix repeat (20 copies)        40.3    5.3e-10   1
PF01391.8.ls Collagen triple helix repeat (20 copies)        42.3    1.5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01391.8.fs   1/1      66   125 ..     1    60 []    40.3  5.3e-10
PF01391.8.ls   1/1      66   125 ..     1    60 []    42.3  1.5e-09
PF00386.12.fs   1/1     131   254 ..     1   138 []   178.0  2.2e-50
PF00386.12.ls   1/1     131   254 ..     1   138 []   179.9    6e-51

Alignments of top-scoring domains:
PF01391.8.fs: domain 1 of 1, from 66 to 125: score 40.3, E = 5.3e-10
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      GppGppGppG pG  G+ G  G+ G  G +G +G++G  Gp+G+ G+
     fk00861    66    GPPGPPGPPGIPGNHGNNGNNGATGHEGAKGEKGDKGDLGPRGERGQ 112  

                   pGppGapGapGpp<-*
                    Gp+G++G pG p   
     fk00861   113 HGPKGEKGYPGIP    125  

PF01391.8.ls: domain 1 of 1, from 66 to 125: score 42.3, E = 1.5e-09
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      GppGppGppG pG  G+ G  G+ G  G +G +G++G  Gp+G+ G+
     fk00861    66    GPPGPPGPPGIPGNHGNNGNNGATGHEGAKGEKGDKGDLGPRGERGQ 112  

                   pGppGapGapGpp<-*
                    Gp+G++G pG p   
     fk00861   113 HGPKGEKGYPGIP    125  

PF00386.12.fs: domain 1 of 1, from 131 to 254: score 178.0, E = 2.2e-50
                   *->AFSAglteslpppnqsgpygetpvvFdkvltNigghYdpaTGkFtCp
                      AF+A+l ++++++ +s       ++F  v tNig+ +d++TG+F +p
     fk00861   131    AFMASLATHFSNQ-NS------GIIFSSVETNIGNFFDVMTGRFGAP 170  

                   vpGvYyFsfhihskgvkeknlkvgLmkNgqevvstydqasngsgkldvaS
                   v GvY+F+f+++ k+ + ++++v+Lm+Ng++v+s+y+++ +g    d++S
     fk00861   171 VSGVYFFTFSMM-KHEDVEEVYVYLMHNGNTVFSMYSYEMKGK--SDTSS 217  

                   gsvvLqLekGDeVWleldggernglysdegdtdstFSGFLL<-*
                   +++vL+L+kGDeVWl++     ng++++++++ stF GFLL   
     fk00861   218 NHAVLKLAKGDEVWLRMG----NGALHGDHQRFSTFAGFLL    254  

PF00386.12.ls: domain 1 of 1, from 131 to 254: score 179.9, E = 6e-51
                   *->AFSAglteslpppnqsgpygetpvvFdkvltNigghYdpaTGkFtCp
                      AF+A+l ++++++ +s       ++F  v tNig+ +d++TG+F +p
     fk00861   131    AFMASLATHFSNQ-NS------GIIFSSVETNIGNFFDVMTGRFGAP 170  

                   vpGvYyFsfhihskgvkeknlkvgLmkNgqevvstydqasngsgkldvaS
                   v GvY+F+f+++ k+ + ++++v+Lm+Ng++v+s+y+++ +g    d++S
     fk00861   171 VSGVYFFTFSMM-KHEDVEEVYVYLMHNGNTVFSMYSYEMKGK--SDTSS 217  

                   gsvvLqLekGDeVWleldggernglysdegdtdstFSGFLL<-*
                   +++vL+L+kGDeVWl++     ng++++++++ stF GFLL   
     fk00861   218 NHAVLKLAKGDEVWLRMG----NGALHGDHQRFSTFAGFLL    254  

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