hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-22370793/chunk_1/iprscan-20080810-22370793.nocrc
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Query sequence: fk00861
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00110                                                  77.2    2.1e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00110    1/1     123   257 ..     1   146 []    77.2  2.1e-18

Alignments of top-scoring domains:
SM00110: domain 1 of 1, from 123 to 257: score 77.2, E = 2.1e-18
                   *->eykakprsAFsvilsyterpPpEmNpgqpirFdkvLyNqqghYdpsT
                      +++   ++AF ++l   +++      +  i+F  v +N+++ +d  T
     fk00861   123    GIPPELQIAFMASLA--THFSN---QNSGIIFSSVETNIGNFFDVMT 164  

                   GkFtCpvPGvYyFsYhievkgrRqnvkvsLmkngiqvlrvvstydeyqkg
                   G+F +pv GvY F++   +  +   v v Lm ng  v +    y ++ kg
     fk00861   165 GRFGAPVSGVYFFTFSMMKHEDVEEVYVYLMHNGNTVFS---MYSYEMKG 211  

                   lydvaSGgalLqLeqGDqVWLelddeeknglyageevdSvFSGFLLfpd<
                     d  S+ a+L+L +GD+VWL++ +   + l ++    S+F GFLLf++ 
     fk00861   212 KSDTSSNHAVLKLAKGDEVWLRMGN---GALHGDHQRFSTFAGFLLFET  257  

                   -*
                     
     fk00861     -    -    

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