hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-22430099/chunk_1/iprscan-20080810-22430099.nocrc
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Query sequence: fk00939
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        73.2    7.6e-19   2
PF00400.22.fs WD domain, G-beta repeat                        69.2    1.5e-18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/2      53    92 ..     1    38 []    45.1  9.5e-12
PF00400.22.ls   1/2      53    92 ..     1    38 []    47.1  5.4e-11
PF00400.22.fs   2/2     112   150 ..     1    38 []    24.1  8.1e-06
PF00400.22.ls   2/2     112   150 ..     1    38 []    26.1  0.00012

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 2, from 53 to 92: score 45.1, E = 9.5e-12
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g c ++l+gH   + +v++sp +  +la++S+D  +k+Wd   
     fk00939    53    GSCShILqGHRQEILAVSWSPRYDYILATASADSRVKLWD    92   

PF00400.22.ls: domain 1 of 2, from 53 to 92: score 47.1, E = 5.4e-11
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g c ++l+gH   + +v++sp +  +la++S+D  +k+Wd   
     fk00939    53    GSCShILqGHRQEILAVSWSPRYDYILATASADSRVKLWD    92   

PF00400.22.fs: domain 2 of 2, from 112 to 150: score 24.1, E = 8.1e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        + +  ++H++ V+ ++f  d g +l++ + D+  ++W+   
     fk00939   112    QAVEsANtAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWN    150  

PF00400.22.ls: domain 2 of 2, from 112 to 150: score 26.1, E = 0.00012
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        + +  ++H++ V+ ++f  d g +l++ + D+  ++W+   
     fk00939   112    QAVEsANtAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWN    150  

//