hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-22430099/chunk_1/iprscan-20080810-22430099.nocrc
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Query sequence: fk00939
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  79.4    4.3e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/2      52    92 ..     1    46 []    47.9  1.4e-09
SM00320    2/2     111   150 ..     1    46 []    31.6  0.00011

Alignments of top-scoring domains:
SM00320: domain 1 of 2, from 52 to 92: score 47.9, E = 1.4e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++ ++l+gH++  ++++v++sp       + +la++s D+ ++lW
     fk00939    52    SgSCSHILQGHRQ--EILAVSWSPRY-----DYILATASaDSRVKLW 91   

                   d<-*
                   d   
     fk00939    92 D    92   

SM00320: domain 2 of 2, from 111 to 150: score 31.6, E = 0.00011
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ + +  ++H+g   V++++f +dg       +l++ ++D+  rlW
     fk00939   111    SqAVESANTAHNG--KVNGLCFTSDG------LHLLTVGtDNRMRLW 149  

                   d<-*
                   +   
     fk00939   150 N    150  

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