hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-22543247/chunk_1/iprscan-20080810-22543247.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk01269
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00146                                                 337.7    7.6e-97   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00146      1/1     378   666 ..     1   336 []   337.7  7.6e-97

Alignments of top-scoring domains:
SM00146: domain 1 of 1, from 378 to 666: score 337.7, E = 7.6e-97
                   *->avIfKggDDLRQDalvlQllrlmdklLkkdsetrrldLhlrpYkvlp
                      ++++Kgg+DLRQD++v Ql+++m+ +L++ds+++++ L+lr+Y+v+p
     fk01269   378    PFLVKGGEDLRQDQRVEQLFQVMNGILAQDSACSQRALQLRTYSVVP 424  

                   tgpksGliEvvpnsetlheIlkelrkkkkipldykqlfmldmlvaeieka
                   + + +++  ++ +++ + + ++ +++   +                    
     fk01269   425 MTSSDPRAPPC-EYKDWLTKMSGKHDVGAY-------------------- 453  

                   qyptitlakakkkalrykhatlleklkvfegatsafkppvLydwfkekfp
                                +l+yk a+++e++++f++  s+++ + L+  f+++++
     fk01269   454 -------------MLMYKGANRTETVTSFRKRESKVPADLLKRAFVRMST 490  

                   dpneiyfeardnFtrScAgySvvtYiLGlGDRHndNImldrktGhlfHID
                   +p e++ + r++F++S+A  ++ ++iLG+GDRH++N+m+ ++tG +++ID
     fk01269   491 SP-EAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGID 539  

                   FGfilgng.pklpgfklfgRErvPFrLTpemvdvmGgGgkpsgvfglFrs
                   FG+++g+++++lp++     E++PFrLT++++++m     p+++ gl++s
     fk01269   540 FGHAFGSAtQFLPVP-----ELMPFRLTRQFINLML----PMKETGLMYS 580  

                   lCerayralRknsnllmnllelMlsdglmpewrsg.ekdikylrerlrld
                   ++++a+ra+R+++ ll+n++ ++++ +  ++w+ +++k++k+ +++++++
     fk01269   581 IMVHALRAFRSDPGLLTNTMDVFVKEPS-FDWKNFeQKMLKKGGSWIQEI 629  

                   vlsdeeaaeyfkktektkliessleslttrlndlfhllaql<-*
                   ++ +++++++     k+++ +  l++ +++++++++ll+++   
     fk01269   630 NVAEKNWYPRQ----KICYAKRKLAGANPAVITCDELLLGH    666  

//