hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23003799/chunk_1/iprscan-20080810-23003799.nocrc
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Query sequence: fk01315
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00170.11.fs bZIP transcription factor                       50.8    8.9e-14   1
PF00170.11.ls bZIP transcription factor                       52.8    1.1e-12   1
PF07716.5.fs Basic region leucine zipper                     48.0    4.2e-12   1
PF07716.5.ls Basic region leucine zipper                     49.9    7.9e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00170.11.fs   1/1     232   297 ..     1    65 []    50.8  8.9e-14
PF00170.11.ls   1/1     232   297 ..     1    65 []    52.8  1.1e-12
PF07716.5.fs   1/1     233   287 ..     1    57 []    48.0  4.2e-12
PF07716.5.ls   1/1     233   287 ..     1    57 []    49.9  7.9e-12

Alignments of top-scoring domains:
PF00170.11.fs: domain 1 of 1, from 232 to 297: score 50.8, E = 8.9e-14
                   *->ekelKrerR.kqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLr
                      e +++r r+ +++NR AA+r+R++++  +  Le k+eeL+  N++L 
     fk01315   232    EDPDERRRKfLERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQLQ 278  

                   kelerLkkevakLksenee<-*
                    e+++Lk+eva+Lk+ + +   
     fk01315   279 NEVSMLKNEVAQLKQLLLT    297  

PF00170.11.ls: domain 1 of 1, from 232 to 297: score 52.8, E = 1.1e-12
                   *->ekelKrerR.kqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLr
                      e +++r r+ +++NR AA+r+R++++  +  Le k+eeL+  N++L 
     fk01315   232    EDPDERRRKfLERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQLQ 278  

                   kelerLkkevakLksenee<-*
                    e+++Lk+eva+Lk+ + +   
     fk01315   279 NEVSMLKNEVAQLKQLLLT    297  

PF07716.5.fs: domain 1 of 1, from 233 to 287: score 48.0, E = 4.2e-12
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
                      ++de+r++  +rN++AA r+R+K+K   + le++++eL++ N+qL  
     fk01315   233    DPDERRRKFLERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQL-- 277  

                   rqkveqLekE<-*
                   +++v++L++E   
     fk01315   278 QNEVSMLKNE    287  

PF07716.5.ls: domain 1 of 1, from 233 to 287: score 49.9, E = 7.9e-12
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
                      ++de+r++  +rN++AA r+R+K+K   + le++++eL++ N+qL  
     fk01315   233    DPDERRRKFLERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQL-- 277  

                   rqkveqLekE<-*
                   +++v++L++E   
     fk01315   278 QNEVSMLKNE    287  

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