hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-23115807/chunk_1/iprscan-20080810-23115807.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk01449 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08344.1.ls Transient receptor ion channel II 153.1 6.9e-43 1 PF08344.1.fs Transient receptor ion channel II 151.1 2.7e-42 1 PF00520.21.ls Ion transport protein 113.0 7.8e-31 1 PF00520.21.fs Ion transport protein 111.2 1.1e-30 1 PF00023.20.fs Ankyrin repeat 30.6 1.5e-07 2 PF00023.20.ls Ankyrin repeat 33.1 8.8e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/2 70 92 .. 1 23 [. 13.7 0.0079 PF00023.20.ls 1/2 70 100 .. 1 33 [] 14.6 0.22 PF00023.20.ls 2/2 142 174 .. 1 33 [] 18.5 0.022 PF00023.20.fs 2/2 142 169 .. 1 28 [. 16.9 0.001 PF08344.1.ls 1/1 177 239 .. 1 63 [] 153.1 6.9e-43 PF08344.1.fs 1/1 177 239 .. 1 63 [] 151.1 2.7e-42 PF00520.21.fs 1/1 405 621 .. 1 224 [] 111.2 1.1e-30 PF00520.21.ls 1/1 405 621 .. 1 224 [] 113.0 7.8e-31 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 2, from 70 to 92: score 13.7, E = 0.0079 *->dGfTPLHlAalrgnlevvklLls<-* G+T+L +A+++ nle+++lLls fk01449 70 LGRTALLIAIENENLELIELLLS 92 PF00023.20.ls: domain 1 of 2, from 70 to 100: score 14.6, E = 0.22 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L +A+++ nle+++lLls ++ + d fk01449 70 LGRTALLIAIENENLELIELLLS--FNVYVGDA 100 PF00023.20.ls: domain 2 of 2, from 142 to 174: score 18.5, E = 0.022 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TP+ lAa+ +n+e++klL+++G ++ fk01449 142 PDITPIILAAHTNNYEIIKLLVQKGVSVPRPHE 174 PF00023.20.fs: domain 2 of 2, from 142 to 169: score 16.9, E = 0.001 *->dGfTPLHlAalrgnlevvklLlsqGAdl<-* TP+ lAa+ +n+e++klL+++G ++ fk01449 142 PDITPIILAAHTNNYEIIKLLVQKGVSV 169 PF08344.1.ls: domain 1 of 1, from 177 to 239: score 153.1, E = 6.9e-43 *->CeCdeCvrsrreDSLrHSrsRINaYRALASpAlisLsseDPiLtAFe C+C eCv+s+++DSLrHSrsR+N+Y+ALASp+li+LsseDP+LtAF+ fk01449 177 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQ 223 LSwELrrLAfiEnEFk<-* LSwEL++L+++EnEFk fk01449 224 LSWELQELSKVENEFK 239 PF08344.1.fs: domain 1 of 1, from 177 to 239: score 151.1, E = 2.7e-42 *->CeCdeCvrsrreDSLrHSrsRINaYRALASpAlisLsseDPiLtAFe C+C eCv+s+++DSLrHSrsR+N+Y+ALASp+li+LsseDP+LtAF+ fk01449 177 CNCVECVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQ 223 LSwELrrLAfiEnEFk<-* LSwEL++L+++EnEFk fk01449 224 LSWELQELSKVENEFK 239 PF00520.21.fs: domain 1 of 1, from 405 to 621: score 111.2, E = 1.1e-30 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++ + +++ F++ ++ +++ g+ + Y++++wN++Df++ fk01449 405 WMILPWVLGFIWGEIKQMWDGGL-------QDYIHDWWNLMDFVMNS 444 pslislilsllgggsegdlyv........res.k.dstlse.gspgllsv ++l+++ l+++ +v+ + ++++ +++ ++tl + l+++ fk01449 445 LYLATISLKIVA-------FVkysalnprESWdMwHPTLVAeA---LFAI 484 lrllRllRvLRllrlirrapglfRWelrtlWelnslgrslksllnvllll ++++ lR l+ l+ + + l++l ++slgr+l ++l++l+++ fk01449 485 ANIFSSLR---LISLFTANSH-----LGPL--QISLGRMLLDILKFLFIY 524 llllfiFaiigvqlFggklnkcc......npingntnFdsfgnaflwlFq +l+l++Fa +++ql+++++ ++ ++++ +++++n+ F++ ++++ +lF+ fk01449 525 CLVLLAFANGLNQLYFYYEETKGltckgiRCEKQNNAFSTLFETLQSLFW 574 tmTteGwgdvmpdtl.....agtvlgyiyfvsfiilgsflllNLfiavi< ++++ ++++ + ++ +++++ ++g + f ++++++ ++llN++ia++ fk01449 575 SIFGL--INLYVTNVkaqheFTEFVGATMFGTYNVISLVVLLNMLIAMM 621 -* fk01449 - - PF00520.21.ls: domain 1 of 1, from 405 to 621: score 113.0, E = 7.8e-31 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++ + +++ F++ ++ +++ g+ + Y++++wN++Df++ fk01449 405 WMILPWVLGFIWGEIKQMWDGGL-------QDYIHDWWNLMDFVMNS 444 pslislilsllgggsegdlyv........res.k.dstlse.gspgllsv ++l+++ l+++ +v+ + ++++ +++ ++tl + l+++ fk01449 445 LYLATISLKIVA-------FVkysalnprESWdMwHPTLVAeA---LFAI 484 lrllRllRvLRllrlirrapglfRWelrtlWelnslgrslksllnvllll ++++ lR l+ l+ + + l++l ++slgr+l ++l++l+++ fk01449 485 ANIFSSLR---LISLFTANSH-----LGPL--QISLGRMLLDILKFLFIY 524 llllfiFaiigvqlFggklnkcc......npingntnFdsfgnaflwlFq +l+l++Fa +++ql+++++ ++ ++++ +++++n+ F++ ++++ +lF+ fk01449 525 CLVLLAFANGLNQLYFYYEETKGltckgiRCEKQNNAFSTLFETLQSLFW 574 tmTteGwgdvmpdtl.....agtvlgyiyfvsfiilgsflllNLfiavi< ++++ ++++ + ++ +++++ ++g + f ++++++ ++llN++ia++ fk01449 575 SIFGL--INLYVTNVkaqheFTEFVGATMFGTYNVISLVVLLNMLIAMM 621 -* fk01449 - - //