hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23181043/chunk_1/iprscan-20080810-23181043.nocrc
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Query sequence: fk01475
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00027.19.ls Cyclic nucleotide-binding domain           162.8    8.4e-46   2
PF00027.19.fs Cyclic nucleotide-binding domain           158.9    3.7e-45   2
PF02197.7.fs Regulatory subunit of type II PKA R-subu    69.2    1.8e-18   1
PF02197.7.ls Regulatory subunit of type II PKA R-subu    71.2    3.2e-18   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF02197.7.fs   1/1      26    63 ..     1    39 []    69.2  1.8e-18
PF02197.7.ls   1/1      26    63 ..     1    39 []    71.2  3.2e-18
PF00027.19.fs   1/2     191   280 ..     1    98 []    66.0  2.2e-18
PF00027.19.ls   1/2     191   280 ..     1    98 []    67.9  3.1e-17
PF00027.19.ls   2/2     313   409 ..     1    98 []    94.9  2.3e-25
PF00027.19.fs   2/2     313   409 ..     1    98 []    93.0  3.7e-26

Alignments of top-scoring domains:
PF02197.7.fs: domain 1 of 1, from 26 to 63: score 69.2, E = 1.8e-18
                   *->hglqaLLedltveVlraqPsDlvqFaadYFnekLeeqRa<-*
                       gl++LL+++tveVlr+qP+Dl++Fa ++F ++L+++++   
     fk01475    26    AGLTELLQGFTVEVLRHQPADLLEFALQHF-TRLQQENE    63   

PF02197.7.ls: domain 1 of 1, from 26 to 63: score 71.2, E = 3.2e-18
                   *->hglqaLLedltveVlraqPsDlvqFaadYFnekLeeqRa<-*
                       gl++LL+++tveVlr+qP+Dl++Fa ++F ++L+++++   
     fk01475    26    AGLTELLQGFTVEVLRHQPADLLEFALQHF-TRLQQENE    63   

PF00027.19.fs: domain 1 of 2, from 191 to 280: score 66.0, E = 2.2e-18
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp
                      ++ +k Ge ++ +Gd +d +Y++  G++ +y++ ++  +  +g +  
     fk01475   191    EKLVKDGEHVIDQGDDGDNFYVIDRGTFDIYVkCDGVGRC-VGNYDN 236  

                   GdffGelallggendspSrhaprsatvvAltdsellvipredflelleed
                      fGelal++++        pr+at++A ++  l+ ++r +f++++ ++
     fk01475   237 RGSFGELALMYNT--------PRAATITATSPGALWGLDRVTFRRIIVKN 278  

                   pe<-*
                    +   
     fk01475   279 NA    280  

PF00027.19.ls: domain 1 of 2, from 191 to 280: score 67.9, E = 3.1e-17
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp
                      ++ +k Ge ++ +Gd +d +Y++  G++ +y++ ++  +  +g +  
     fk01475   191    EKLVKDGEHVIDQGDDGDNFYVIDRGTFDIYVkCDGVGRC-VGNYDN 236  

                   GdffGelallggendspSrhaprsatvvAltdsellvipredflelleed
                      fGelal++++        pr+at++A ++  l+ ++r +f++++ ++
     fk01475   237 RGSFGELALMYNT--------PRAATITATSPGALWGLDRVTFRRIIVKN 278  

                   pe<-*
                    +   
     fk01475   279 NA    280  

PF00027.19.ls: domain 2 of 2, from 313 to 409: score 94.9, E = 2.3e-25
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreq......i
                      ++ +  Ge i+ +Gd ads++iv+sG+vk++ + ++  e+++++   
     fk01475   313    TKVYNDGEQIIAQGDSADSFFIVESGEVKITMkRKGKSEVeengavE 359  

                   lgilgpGdffGelallggendspSrhaprsatvvAltdsellvipredfl
                   ++++++G++fGelal++++        pr+a++ A++ +++l+++ ++f+
     fk01475   360 IARCSRGQYFGELALVTNK--------PRAASAHAIGTVKCLAMDVQAFE 401  

                   elleedpe<-*
                   +ll  + e   
     fk01475   402 RLLGPCME    409  

PF00027.19.fs: domain 2 of 2, from 313 to 409: score 93.0, E = 3.7e-26
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreq......i
                      ++ +  Ge i+ +Gd ads++iv+sG+vk++ + ++  e+++++   
     fk01475   313    TKVYNDGEQIIAQGDSADSFFIVESGEVKITMkRKGKSEVeengavE 359  

                   lgilgpGdffGelallggendspSrhaprsatvvAltdsellvipredfl
                   ++++++G++fGelal++++        pr+a++ A++ +++l+++ ++f+
     fk01475   360 IARCSRGQYFGELALVTNK--------PRAASAHAIGTVKCLAMDVQAFE 401  

                   elleedpe<-*
                   +ll  + e   
     fk01475   402 RLLGPCME    409  

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