hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23181043/chunk_1/iprscan-20080810-23181043.nocrc
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Query sequence: fk01475
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00100                                                 208.0    8.5e-58   2
SM00394                                                  71.2    1.3e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00394    1/1      26    63 ..     1    39 []    71.2  1.3e-16
SM00100    1/2     173   293 ..     1   123 []   101.9  7.3e-26
SM00100    2/2     295   419 ..     1   123 []   106.1  4.1e-27

Alignments of top-scoring domains:
SM00394: domain 1 of 1, from 26 to 63: score 71.2, E = 1.3e-16
                   *->hglqaLLedltveVlraqPsDlvqFaadYFnekLeeqRa<-*
                       gl++LL+++tveVlr+qP+Dl++Fa ++F ++L+++++   
     fk01475    26    AGLTELLQGFTVEVLRHQPADLLEFALQHF-TRLQQENE    63   

SM00100: domain 1 of 2, from 173 to 293: score 101.9, E = 7.3e-26
                   *->lfkaldaeelreladalepvrypaGevifrqGdpgdsfYiivsGeve
                      lfk+ld+e++++++da++++ +++Ge ++ qGd gd+fY+i +G+++
     fk01475   173    LFKNLDPEQMSQVLDAMFEKLVKDGEHVIDQGDDGDNFYVIDRGTFD 219  

                   vyktrlstledgreqilatlgpGdfFGElall...rrarsaaavalvela
                   +y++      dg +  ++ +    +FGElal+ +++ra++++a++   l+
     fk01475   220 IYVK-----CDGVGRCVGNYDNRGSFGELALMyntPRAATITATSPGALW 264  

                   tllridferflqllpenpqlllelllell<-*
                    l+r++f+r++    + +++++e ++e l   
     fk01475   265 GLDRVTFRRIIVKNNAKKRKMYESFIESL    293  

SM00100: domain 2 of 2, from 295 to 419: score 106.1, E = 4.1e-27
                   *->lfkaldaeelreladalepvrypaGevifrqGdpgdsfYiivsGeve
                      ++k+l+ +e+++++d++ +++y +Ge i++qGd +dsf+i++sGev+
     fk01475   295    FLKSLEFSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVK 341  

                   vykt..rlstledgreqilatlgpGdfFGElall.rrarsaaavalvela
                   ++ +++++s+ e+ + +++a++++G++FGElal+++ +r+a+a a    +
     fk01475   342 ITMKrkGKSEVEENGAVEIARCSRGQYFGELALVtNKPRAASAHAI-GTV 390  

                   tllridferflqllpenpqlllelllell<-*
                   ++l +d + f++ll+ ++++++++++++    
     fk01475   391 KCLAMDVQAFERLLGPCMEIMKRNIATYE    419  

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