hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23243077/chunk_1/iprscan-20080810-23243077.nocrc
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Query sequence: fk01540
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF06201.4.ls Domain of Unknown Function (DUF1000)        156.2    7.8e-44   1
PF06201.4.fs Domain of Unknown Function (DUF1000)        154.3    2.9e-43   1
PF00085.10.fs Thioredoxin                                  65.2    1.1e-17   1
PF00085.10.ls Thioredoxin                                  57.2      5e-14   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00085.10.ls   1/1       1   101 [.     1   111 []    57.2    5e-14
PF00085.10.fs   1/1      29   101 ..    32   111 .]    65.2  1.1e-17
PF06201.4.fs   1/1     147   264 ..     1   130 []   154.3  2.9e-43
PF06201.4.ls   1/1     147   264 ..     1   130 []   156.2  7.8e-44

Alignments of top-scoring domains:
PF00085.10.ls: domain 1 of 1, from 1 to 101: score 57.2, E = 5e-14
                   *->vvlvltdenFdeevak.sdekkpVLVdFYApWCGpCKmlAPeyeklA
                      +  v +d  F+ e+   ++   + +V+F+   CGpC ++AP +   +
     fk01540     1    P--VGSDPDFQPELSGaGS--RLAVVKFTMRGCGPCLRIAPAFSSMS 43   

                   qeykdetsdvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepidyv
                   ++y+    + +f++VD++ ++ +a+ +++++ PT++ff+n  +++  +y+
     fk01540    44 NKYP----QAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRID--QYQ 87   

                   GaRtkddLvafikkh<-*
                   Ga ++ +L++ ik+h   
     fk01540    88 GA-DAVGLEEKIKQH    101  

PF00085.10.fs: domain 1 of 1, from 29 to 101: score 65.2, E = 1.1e-17
                   *->CGpCKmlAPeyeklAqeykdetsdvkfaKVDaDenpdlaskygVrgf
                      CGpC ++AP +   +++y+    + +f++VD++ ++ +a+ +++++ 
     fk01540    29    CGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQCQGTAATNNISAT 71   

                   PTlkffknGkkvepidyvGaRtkddLvafikkh<-*
                   PT++ff+n  +++  +y+Ga ++ +L++ ik+h   
     fk01540    72 PTFLFFRNKVRID--QYQGA-DAVGLEEKIKQH    101  

PF06201.4.fs: domain 1 of 1, from 147 to 264: score 154.3, E = 2.9e-43
                   *->dsepyveSDaDdqLLiniPFtspVkLksilirggadpedddDEasaP
                       ++ ++eSD+D+qLLi++ F++pVkL s  + g+  +++     ++P
     fk01540   147    KDTTFLESDCDEQLLITVAFNQPVKLYSMKFQGP--DNG-----QGP 186  

                   ktvKLFkNrrpnlDFddvedltPtqtleLpeddlgalggvveypLkvvKF
                   k vK+F+N++ ++DF ++e+ +Ptq leL+edd     +  ++pL++vKF
     fk01540   187 KYVKIFINLPRSMDFEEAERSEPTQALELTEDDIK---EDGIVPLRYVKF 233  

                   qnVnsLtiffednfgddeeDeTriyyIgLrGea<-*
                   qnVns tif+++n+g  ee++Tri y  + G++   
     fk01540   234 QNVNSVTIFVQSNQG--EEETTRISYFTFIGTP    264  

PF06201.4.ls: domain 1 of 1, from 147 to 264: score 156.2, E = 7.8e-44
                   *->dsepyveSDaDdqLLiniPFtspVkLksilirggadpedddDEasaP
                       ++ ++eSD+D+qLLi++ F++pVkL s  + g+  +++     ++P
     fk01540   147    KDTTFLESDCDEQLLITVAFNQPVKLYSMKFQGP--DNG-----QGP 186  

                   ktvKLFkNrrpnlDFddvedltPtqtleLpeddlgalggvveypLkvvKF
                   k vK+F+N++ ++DF ++e+ +Ptq leL+edd     +  ++pL++vKF
     fk01540   187 KYVKIFINLPRSMDFEEAERSEPTQALELTEDDIK---EDGIVPLRYVKF 233  

                   qnVnsLtiffednfgddeeDeTriyyIgLrGea<-*
                   qnVns tif+++n+g  ee++Tri y  + G++   
     fk01540   234 QNVNSVTIFVQSNQG--EEETTRISYFTFIGTP    264  

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