# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk01593.fasta.nr -Q fk01593.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk01593, 360 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6837506 sequences Expectation_n fit: rho(ln(x))= 6.5099+/-0.000194; mu= 4.3342+/- 0.011 mean_var=108.7602+/-21.087, 0's: 41 Z-trim: 68 B-trim: 101 in 3/63 Lambda= 0.122981 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|56417679|emb|CAI20286.1| nuclear transcription ( 318) 2054 374.6 1.3e-101 gi|53361|emb|CAA39023.1| CAAT-box DNA binding prot ( 318) 2049 373.8 2.4e-101 gi|24660184|gb|AAH39244.1| NFYA protein [Homo sapi ( 318) 2045 373.0 3.9e-101 gi|20988217|gb|AAH29695.1| Nuclear transcription f ( 318) 2044 372.9 4.5e-101 gi|119624422|gb|EAX04017.1| nuclear transcription ( 312) 1997 364.5 1.4e-98 gi|126309831|ref|XP_001370317.1| PREDICTED: simila ( 318) 1993 363.8 2.4e-98 gi|200042|gb|AAA39816.1| NF-YA protein ( 312) 1992 363.6 2.6e-98 gi|94534791|gb|AAI16041.1| NFYA protein [Bos tauru ( 312) 1987 362.8 4.9e-98 gi|149626193|ref|XP_001512202.1| PREDICTED: simila ( 319) 1963 358.5 9.5e-97 gi|115845|sp|P23708|NFYA_MOUSE Nuclear transcripti ( 346) 1920 350.9 2e-94 gi|12836120|dbj|BAB23511.1| unnamed protein produc ( 347) 1918 350.5 2.6e-94 gi|115844|sp|P23511|NFYA_HUMAN Nuclear transcripti ( 347) 1918 350.5 2.6e-94 gi|119624426|gb|EAX04021.1| nuclear transcription ( 347) 1916 350.2 3.3e-94 gi|119624425|gb|EAX04020.1| nuclear transcription ( 348) 1915 350.0 3.7e-94 gi|194039245|ref|XP_001925429.1| PREDICTED: simila ( 347) 1910 349.1 6.9e-94 gi|148691667|gb|EDL23614.1| nuclear transcription ( 339) 1868 341.7 1.2e-91 gi|149069489|gb|EDM18930.1| nuclear transcription ( 340) 1863 340.8 2.2e-91 gi|75057828|sp|Q5E9S2|NFYA_BOVIN Nuclear transcrip ( 341) 1861 340.4 2.8e-91 gi|115846|sp|P18576|NFYA_RAT Nuclear transcription ( 341) 1861 340.4 2.8e-91 gi|119624419|gb|EAX04014.1| nuclear transcription ( 342) 1857 339.7 4.6e-91 gi|126309829|ref|XP_001370287.1| PREDICTED: simila ( 347) 1857 339.7 4.6e-91 gi|149626191|ref|XP_001512231.1| PREDICTED: simila ( 348) 1842 337.1 2.9e-90 gi|114607345|ref|XP_001173985.1| PREDICTED: simila ( 270) 1752 321.0 1.5e-85 gi|38174748|gb|AAH61417.1| Nuclear transcription f ( 298) 1735 318.0 1.4e-84 gi|71679782|gb|AAI00179.1| NFYA protein [Xenopus l ( 298) 1709 313.4 3.3e-83 gi|183782|gb|AAA35950.1| CCAAT-binding protein ( 257) 1665 305.6 6.6e-81 gi|3170223|gb|AAC82335.1| nuclear Y/CCAAT-box bind ( 305) 1658 304.4 1.8e-80 gi|126631483|gb|AAI33846.1| Nfya protein [Danio re ( 321) 1658 304.4 1.9e-80 gi|92097664|gb|AAI15103.1| Nfya protein [Danio rer ( 295) 1647 302.4 6.7e-80 gi|148691668|gb|EDL23615.1| nuclear transcription ( 266) 1645 302.0 7.9e-80 gi|169146252|emb|CAQ14847.1| novel protein similar ( 362) 1587 291.8 1.3e-76 gi|49903860|gb|AAH76078.1| Zgc:92567 [Danio rerio] ( 336) 1565 287.9 1.8e-75 gi|169146251|emb|CAQ14846.1| novel protein similar ( 358) 1510 278.2 1.6e-72 gi|47228766|emb|CAG07498.1| unnamed protein produc ( 328) 1492 274.9 1.4e-71 gi|148725376|emb|CAN87934.1| NFYA, nuclear transcr ( 399) 1490 274.6 2.1e-71 gi|111308018|gb|AAI21726.1| Nfya protein [Danio re ( 265) 1452 267.8 1.6e-69 gi|63100566|gb|AAH95112.1| Nfya protein [Danio rer ( 265) 1438 265.3 9e-69 gi|126309833|ref|XP_001370346.1| PREDICTED: simila ( 274) 1372 253.6 3.1e-65 gi|149626195|ref|XP_001512267.1| PREDICTED: simila ( 274) 1364 252.2 8.2e-65 gi|53127366|emb|CAG31066.1| hypothetical protein [ ( 274) 1350 249.7 4.6e-64 gi|109071077|ref|XP_001117254.1| PREDICTED: simila ( 244) 1309 242.4 6.5e-62 gi|119624420|gb|EAX04015.1| nuclear transcription ( 161) 982 184.2 1.4e-44 gi|310665|gb|AAC37172.1| Nf-Y-A subunit gi|475 ( 400) 623 120.8 4.2e-25 gi|156555199|ref|XP_001603926.1| PREDICTED: simila ( 323) 599 116.5 6.8e-24 gi|110750876|ref|XP_001121566.1| PREDICTED: simila ( 303) 595 115.8 1.1e-23 gi|189236433|ref|XP_972706.2| PREDICTED: similar t ( 322) 569 111.2 2.7e-22 gi|193673946|ref|XP_001949159.1| PREDICTED: simila ( 386) 568 111.0 3.5e-22 gi|70570416|dbj|BAE06596.1| transcription factor p ( 383) 563 110.2 6.5e-22 gi|157020155|gb|EDO64595.1| AGAP007376-PA [Anophel ( 356) 439 88.1 2.6e-15 gi|190623574|gb|EDV39098.1| GF24667 [Drosophila an ( 353) 435 87.4 4.2e-15 >>gi|56417679|emb|CAI20286.1| nuclear transcription fact (318 aa) initn: 2054 init1: 2054 opt: 2054 Z-score: 1979.4 bits: 374.6 E(): 1.3e-101 Smith-Waterman score: 2054; 100.000% identity (100.000% similar) in 318 aa overlap (43-360:1-318) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP :::::::::::::::::::::::::::::: gi|564 MEQYTANSNSSTEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|564 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|564 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|564 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 160 170 180 190 200 210 260 270 280 290 300 310 fk0159 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|564 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL 220 230 240 250 260 270 320 330 340 350 360 fk0159 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::::::::::::: gi|564 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 280 290 300 310 >>gi|53361|emb|CAA39023.1| CAAT-box DNA binding protein (318 aa) initn: 2049 init1: 2049 opt: 2049 Z-score: 1974.6 bits: 373.8 E(): 2.4e-101 Smith-Waterman score: 2049; 99.686% identity (100.000% similar) in 318 aa overlap (43-360:1-318) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP :::::.:::::::::::::::::::::::: gi|533 MEQYTTNSNSSTEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|533 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|533 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|533 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 160 170 180 190 200 210 260 270 280 290 300 310 fk0159 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|533 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL 220 230 240 250 260 270 320 330 340 350 360 fk0159 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::::::::::::: gi|533 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 280 290 300 310 >>gi|24660184|gb|AAH39244.1| NFYA protein [Homo sapiens] (318 aa) initn: 2045 init1: 2045 opt: 2045 Z-score: 1970.8 bits: 373.0 E(): 3.9e-101 Smith-Waterman score: 2045; 99.686% identity (100.000% similar) in 318 aa overlap (43-360:1-318) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP :::::::::::::::::::::::::::::: gi|246 MEQYTANSNSSTEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|246 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|246 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|246 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 160 170 180 190 200 210 260 270 280 290 300 310 fk0159 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|246 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYNRILKRRQARAKLEAEGKIPKERRKYL 220 230 240 250 260 270 320 330 340 350 360 fk0159 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::::::::::::: gi|246 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 280 290 300 310 >>gi|20988217|gb|AAH29695.1| Nuclear transcription facto (318 aa) initn: 2044 init1: 2044 opt: 2044 Z-score: 1969.8 bits: 372.9 E(): 4.5e-101 Smith-Waterman score: 2044; 99.371% identity (100.000% similar) in 318 aa overlap (43-360:1-318) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP :::::.:::::::::::::::::::::::: gi|209 MEQYTTNSNSSTEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|209 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 160 170 180 190 200 210 260 270 280 290 300 310 fk0159 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|209 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEVEGKIPKERRKYL 220 230 240 250 260 270 320 330 340 350 360 fk0159 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::::::::::::: gi|209 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 280 290 300 310 >>gi|119624422|gb|EAX04017.1| nuclear transcription fact (312 aa) initn: 1037 init1: 1037 opt: 1997 Z-score: 1924.9 bits: 364.5 E(): 1.4e-98 Smith-Waterman score: 1997; 98.113% identity (98.113% similar) in 318 aa overlap (43-360:1-312) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP :::::::::::::::::::::::::::::: gi|119 MEQYTANSNSSTEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM ::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LQQ------GMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 160 170 180 190 200 260 270 280 290 300 310 fk0159 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL 210 220 230 240 250 260 320 330 340 350 360 fk0159 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 270 280 290 300 310 >>gi|126309831|ref|XP_001370317.1| PREDICTED: similar to (318 aa) initn: 1993 init1: 1993 opt: 1993 Z-score: 1920.9 bits: 363.8 E(): 2.4e-98 Smith-Waterman score: 1993; 96.855% identity (98.742% similar) in 318 aa overlap (43-360:1-318) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP :::::::::::::::::::::::::::::: gi|126 MEQYTANSNSSTEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::.::::::::::::::::::::::::::::::... ::::::::: gi|126 LMVQVSGGQLITSAGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQVSIFQTDQIQIQGGQA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 160 170 180 190 200 210 260 270 280 290 300 310 fk0159 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL 220 230 240 250 260 270 320 330 340 350 360 fk0159 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::::::.:.:::: gi|126 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMAQMIRVS 280 290 300 310 >>gi|200042|gb|AAA39816.1| NF-YA protein (312 aa) initn: 1037 init1: 1037 opt: 1992 Z-score: 1920.1 bits: 363.6 E(): 2.6e-98 Smith-Waterman score: 1992; 97.799% identity (98.113% similar) in 318 aa overlap (43-360:1-312) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP :::::.:::::::::::::::::::::::: gi|200 MEQYTTNSNSSTEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM ::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 LQQ------GMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 160 170 180 190 200 260 270 280 290 300 310 fk0159 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL 210 220 230 240 250 260 320 330 340 350 360 fk0159 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::::::::::::: gi|200 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 270 280 290 300 310 >>gi|94534791|gb|AAI16041.1| NFYA protein [Bos taurus] (312 aa) initn: 1037 init1: 1037 opt: 1987 Z-score: 1915.3 bits: 362.8 E(): 4.9e-98 Smith-Waterman score: 1987; 97.484% identity (98.113% similar) in 318 aa overlap (43-360:1-312) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP ::::.::::::.:::::::::::::::::: gi|945 MEQYAANSNSSAEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|945 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|945 VQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTI 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 LQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM ::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|945 LQQ------GMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMM 160 170 180 190 200 260 270 280 290 300 310 fk0159 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|945 VPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYL 210 220 230 240 250 260 320 330 340 350 360 fk0159 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::::::::::::: gi|945 HESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS 270 280 290 300 310 >>gi|149626193|ref|XP_001512202.1| PREDICTED: similar to (319 aa) initn: 1429 init1: 1429 opt: 1963 Z-score: 1892.1 bits: 358.5 E(): 9.5e-97 Smith-Waterman score: 1963; 95.925% identity (98.746% similar) in 319 aa overlap (43-360:1-319) 20 30 40 50 60 70 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQVQGQP ::::.:::..:::::::::::::::::::: gi|149 MEQYAANSSNSTEQIVVQAGQIQQQVQGQP 10 20 30 80 90 100 110 120 130 fk0159 LMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQA :::::::::::::.:::::::::::::::::::::::::::::::::: :.::::::. : gi|149 LMVQVSGGQLITSAGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVQPSQIQIQGSPA 40 50 60 70 80 90 140 150 160 170 180 190 fk0159 VQVQ-GQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGT :::: :::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VQVQQGQQGPTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGT 100 110 120 130 140 150 200 210 220 230 240 250 fk0159 ILQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVM :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|149 ILQQVTVPVSGMITIPAASLAGAQIVQAGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVM 160 170 180 190 200 210 260 270 280 290 300 310 fk0159 MVPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MVPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKY 220 230 240 250 260 270 320 330 340 350 360 fk0159 LHESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS :::::::::::::::::::::::::::::::::::::.::::::.:::: gi|149 LHESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQASEEAMTQMIRVS 280 290 300 310 >>gi|115845|sp|P23708|NFYA_MOUSE Nuclear transcription f (346 aa) initn: 1909 init1: 1909 opt: 1920 Z-score: 1850.4 bits: 350.9 E(): 2e-94 Smith-Waterman score: 1983; 91.618% identity (91.908% similar) in 346 aa overlap (43-360:1-346) 20 30 40 50 60 fk0159 RAANRGSEARSVPHSLLGSPEWTGISLGGTMEQYTANSNSSTEQIVVQAGQIQQQ----- :::::.::::::::::::::::::: gi|115 MEQYTTNSNSSTEQIVVQAGQIQQQQGGVT 10 20 30 70 80 90 100 fk0159 -----------------------VQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIM ::::::::::::::::::::::::::::::::::::: gi|115 AVQLQTEAQVASASGQQVQTLQVVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIM 40 50 60 70 80 90 110 120 130 140 150 160 fk0159 QVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 QVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQ 100 110 120 130 140 150 170 180 190 200 210 220 fk0159 IAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 IAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTN 160 170 180 190 200 210 230 240 250 260 270 280 fk0159 TTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 TTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQ 220 230 240 250 260 270 290 300 310 320 330 340 fk0159 YHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHMQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 YHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHMQD 280 290 300 310 320 330 350 360 fk0159 PNQADEEAMTQIIRVS :::::::::::::::: gi|115 PNQADEEAMTQIIRVS 340 360 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 23:28:19 2008 done: Sun Aug 10 23:30:49 2008 Total Scan time: 780.720 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]