hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-23362144/chunk_1/iprscan-20080810-23362144.nocrc
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Query sequence: fk01625
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00028.8.ls Cadherin domain 270.7 2.7e-78 5
PF00028.8.fs Cadherin domain 263.9 3e-76 5
PF08266.2.fs Cadherin-like 55.5 1e-15 1
PF08266.2.ls Cadherin-like -14.5 0.00039 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF08266.2.ls 1/1 1 31 [. 1 84 [] -14.5 0.00039
PF08266.2.fs 1/1 1 31 [. 54 84 .] 55.5 1e-15
PF00028.8.fs 1/5 57 152 .. 1 107 [] 40.8 4.3e-11
PF00028.8.ls 1/5 57 152 .. 1 107 [] 42.7 1.2e-09
PF00028.8.fs 2/5 166 257 .. 1 107 [] 75.1 6.2e-21
PF00028.8.ls 2/5 166 257 .. 1 107 [] 77.0 5.7e-20
PF00028.8.fs 3/5 271 361 .. 1 107 [] 33.1 7.1e-09
PF00028.8.ls 3/5 271 361 .. 1 107 [] 34.9 2.5e-07
PF00028.8.ls 4/5 375 471 .. 1 107 [] 75.9 1.2e-19
PF00028.8.fs 4/5 375 471 .. 1 107 [] 74.1 1.3e-20
PF00028.8.ls 5/5 487 582 .. 1 107 [] 40.2 6.4e-09
PF00028.8.fs 5/5 499 582 .. 9 107 .] 40.7 4.6e-11
Alignments of top-scoring domains:
PF08266.2.ls: domain 1 of 1, from 1 to 31: score -14.5, E = 0.00039
*->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF
fk01625 - ----------------------------------------------- -
qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-*
G+Ll+nE++DRE+LCg++epC+L +++l+++
fk01625 1 ------GNLLTNEKLDREKLCGPKEPCMLYFQILMDD 31
PF08266.2.fs: domain 1 of 1, from 1 to 31: score 55.5, E = 1e-15
*->GdLlvnERiDREeLCgqsepCvLhlevllEn<-*
G+Ll+nE++DRE+LCg++epC+L +++l+++
fk01625 1 GNLLTNEKLDREKLCGPKEPCMLYFQILMDD 31
PF00028.8.fs: domain 1 of 5, from 57 to 152: score 40.8, E = 4.3e-11
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
+ ++En++ Gt +A+D+D +g N+ Y i++++ F+
fk01625 57 MVLKISENTAEGTAFRLERAQDPD--EGHNSIQNYTISSNS---FFH 98
IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg
I +G++eg+ +++ + k LD Ee+ +e +Lt+ A D+ g+
fk01625 99 IKI-SGSDEGMiypeLVLDKALDGEEQ--EELSLTLTALDG-------GS 138
pplsstatvtitVl<-*
p++s+t t++i Vl
fk01625 139 PSRSGTSTIRIVVL 152
PF00028.8.ls: domain 1 of 5, from 57 to 152: score 42.7, E = 1.2e-09
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
+ ++En++ Gt +A+D+D +g N+ Y i++++ F+
fk01625 57 MVLKISENTAEGTAFRLERAQDPD--EGHNSIQNYTISSNS---FFH 98
IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg
I +G++eg+ +++ + k LD Ee+ +e +Lt+ A D+ g+
fk01625 99 IKI-SGSDEGMiypeLVLDKALDGEEQ--EELSLTLTALDG-------GS 138
pplsstatvtitVl<-*
p++s+t t++i Vl
fk01625 139 PSRSGTSTIRIVVL 152
PF00028.8.fs: domain 2 of 5, from 166 to 257: score 75.1, E = 6.2e-21
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw
y+ + pEn+pvG+ + v A DaD +g N+ ++Ys+ +++ +
fk01625 166 YETQAPENSPVGSLIVKVSAGDAD--SGVNAEVSYSFFDASEdiLTT 210
FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp
F I+p +G+ i++++ LD+E + Y +++ A+D++ +
fk01625 211 FQINPFSGE----IFLRELLDYELV--NSYKINIQAMDGG---------G 245
lsstatvtitVl<-*
ls+++tv i+Vl
fk01625 246 LSARCTVLIKVL 257
PF00028.8.ls: domain 2 of 5, from 166 to 257: score 77.0, E = 5.7e-20
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw
y+ + pEn+pvG+ + v A DaD +g N+ ++Ys+ +++ +
fk01625 166 YETQAPENSPVGSLIVKVSAGDAD--SGVNAEVSYSFFDASEdiLTT 210
FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp
F I+p +G+ i++++ LD+E + Y +++ A+D++ +
fk01625 211 FQINPFSGE----IFLRELLDYELV--NSYKINIQAMDGG---------G 245
lsstatvtitVl<-*
ls+++tv i+Vl
fk01625 246 LSARCTVLIKVL 257
PF00028.8.fs: domain 3 of 5, from 271 to 361: score 33.1, E = 7.1e-09
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
s sv En+p G ++++++ D+D +g Ng+ + p F
fk01625 271 LSNSVAENSP-GIVLAVFKIKDRD--SGENGKTICYVQDNLP---FF 311
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
+ p + dn i+ t LDRE+ eY++t+ +tD g+p l
fk01625 312 LKP-SVDNFYILMTEGALDRESK--AEYNITITVTDL-------GTPRLK 351
statvtitVl<-*
++ ++t +V
fk01625 352 TEHSITLQVS 361
PF00028.8.ls: domain 3 of 5, from 271 to 361: score 34.9, E = 2.5e-07
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
s sv En+p G ++++++ D+D +g Ng+ + p F
fk01625 271 LSNSVAENSP-GIVLAVFKIKDRD--SGENGKTICYVQDNLP---FF 311
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
+ p + dn i+ t LDRE+ eY++t+ +tD g+p l
fk01625 312 LKP-SVDNFYILMTEGALDRESK--AEYNITITVTDL-------GTPRLK 351
statvtitVl<-*
++ ++t +V
fk01625 352 TEHSITLQVS 361
PF00028.8.ls: domain 4 of 5, from 375 to 471: score 75.9, E = 1.2e-19
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.....
y+ v+En ++ ++++v AtD+D +g+N++++Ys+l++ ++ +
fk01625 375 YTLFVRENNSPALHIGSVSATDRD--SGTNAQVTYSLLPPQDphlpl 419
ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg
+ +I+ d+G ++ ++LD+E+ + + + v A+D+ g
fk01625 420 ASLVSINADNGH----LFALRSLDYEAL--QAFDFRVGASDR-------G 456
gpplsstatvtitVl<-*
+p+lss+a v++ Vl
fk01625 457 SPALSSEALVRVLVL 471
PF00028.8.fs: domain 4 of 5, from 375 to 471: score 74.1, E = 1.3e-20
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.....
y+ v+En ++ ++++v AtD+D +g+N++++Ys+l++ ++ +
fk01625 375 YTLFVRENNSPALHIGSVSATDRD--SGTNAQVTYSLLPPQDphlpl 419
ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg
+ +I+ d+G ++ ++LD+E+ + + + v A+D+ g
fk01625 420 ASLVSINADNGH----LFALRSLDYEAL--QAFDFRVGASDR-------G 456
gpplsstatvtitVl<-*
+p+lss+a v++ Vl
fk01625 457 SPALSSEALVRVLVL 471
PF00028.8.ls: domain 5 of 5, from 487 to 582: score 40.2, E = 6.4e-09
*->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsilggnpg
sa + E +p+ ++G v+ v A+D D +g+N+ ++Y +l+ ++
fk01625 487 GSAPCTELVPraaePGYLVTKVVAVDGD--SGQNAWLSYQLLKATEP 531
gwFrIdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllasgg
g F + ++G+ ++t++ L ++ +++L+v+++D+ g
fk01625 532 GLFGVWAHNGE----VRTARLLSE---RdAAKHRLVVLVKDN-------G 567
gpplsstatvtitVl<-*
+pp+s+tat+++ +
fk01625 568 EPPRSATATLHVLLV 582
PF00028.8.fs: domain 5 of 5, from 499 to 582: score 40.7, E = 4.6e-11
*->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn
a +G v+ v A+D D +g+N+ ++Y +l+ ++g F + ++G+
fk01625 499 AEPGYLVTKVVAVDGD--SGQNAWLSYQLLKATEPGLFGVWAHNGE- 542
egiisttkpLDREeif.ngeYeLtveAtDadpllasgggpplsstatvti
++t++ L ++ +++L+v+++D+ g+pp+s+tat+++
fk01625 543 ---VRTARLLSE---RdAAKHRLVVLVKDN-------GEPPRSATATLHV 579
tVl<-*
+
fk01625 580 LLV 582
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