hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23362144/chunk_1/iprscan-20080810-23362144.nocrc
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Query sequence: fk01625
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 405.4   3.2e-117   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/5      74   159 ..     1   121 []    68.1  1.1e-15
SM00112    2/5     183   264 ..     1   121 []   105.0  8.7e-27
SM00112    3/5     287   368 ..     1   121 []    70.9  1.6e-16
SM00112    4/5     392   478 ..     1   121 []   103.3  2.8e-26
SM00112    5/5     508   589 ..     1   121 []    58.1  1.1e-12

Alignments of top-scoring domains:
SM00112: domain 1 of 5, from 74 to 159: score 68.1, E = 1.1e-15
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsI...dpetGtngp
                       +A D+D+g   +N+         Y+i+s+++F+I+ + ++ G ++p
     fk01625    74    ERAQDPDEG---HNSI------QNYTISSnsFFHIkisGSDEGMIYP 111  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++++ k+LD Eeq         +e +Lt +A DgG+p+     
     fk01625   112 -------ELVLDKALDGEEQ---------EELSLTLTALDGGSPS----- 140  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+t+t+++ VlDvNDN P   
     fk01625   141 ----------RSGTSTIRIVVLDVNDNVP    159  

SM00112: domain 2 of 5, from 183 to 264: score 105.0, E = 8.7e-27
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      vsA DaDsg    N++      v+Ys+ + +++  + F+I+p +G  
     fk01625   183    VSAGDADSG---VNAE------VSYSFFDasediltTFQINPFSG-- 218  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +i++++ LD+E            +Y ++++A+DgGg     
     fk01625   219 ---------EIFLRELLDYELV---------NSYKINIQAMDGGG----- 245  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               ls+ +tv ++VlD NDN+P   
     fk01625   246 ------------LSARCTVLIKVLDSNDNPP    264  

SM00112: domain 3 of 5, from 287 to 368: score 70.9, E = 1.6e-16
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      ++  D+Dsg   eNgk        + + ++ +F + p+  +      
     fk01625   287    FKIKDRDSG---ENGK------TICYVQDnlPFFLKPSVDN------ 318  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++i+ t ++LDRE++         +eY++t+++tD G+p+        
     fk01625   319 --FYILMTEGALDRESK---------AEYNITITVTDLGTPR-------- 349  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l ++ ++t +V DvNDNaP   
     fk01625   350 -------LKTEHSITLQVSDVNDNAP    368  

SM00112: domain 4 of 5, from 392 to 478: score 103.3, E = 2.8e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsAtD+Dsg   +N++      vtYs+l++++++ +  +l sI++++
     fk01625   392    VSATDRDSG---TNAQ------VTYSLLPpqdphlplasLVSINADN 429  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            ++++++LD+E+          + + ++v A+D+G+p 
     fk01625   430 GH-----------LFALRSLDYEAL---------QAFDFRVGASDRGSPA 459  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss+a v+v VlD NDN P   
     fk01625   460 ---------------LSSEALVRVLVLDANDNSP    478  

SM00112: domain 5 of 5, from 508 to 589: score 58.1, E = 1.1e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D Dsg   +N++      ++Y++l  ++++lF + +++G    
     fk01625   508    VVAVDGDSG---QNAW------LSYQLLKatepgLFGVWAHNG---- 541  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++t++ L   +          ++++L+v ++D+G+pp     
     fk01625   542 -------EVRTARLLSERDA---------AKHRLVVLVKDNGEPP----- 570  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+tat++v ++D    +    
     fk01625   571 ----------RSATATLHVLLVDGFSQPY    589  

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