hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-23474579/chunk_1/iprscan-20080810-23474579.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk02065 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00653.12.ls Inhibitor of Apoptosis domain 385.2 9.2e-113 3 PF00653.12.fs Inhibitor of Apoptosis domain 379.5 4.6e-111 3 PF00619.12.ls Caspase recruitment domain 106.0 1e-28 1 PF00619.12.fs Caspase recruitment domain 104.1 3.3e-28 1 PF00097.15.fs Zinc finger, C3HC4 type (RING finger) 20.7 6.3e-07 1 PF00097.15.ls Zinc finger, C3HC4 type (RING finger) 22.3 0.00072 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00653.12.fs 1/3 77 142 .. 1 75 [] 117.5 5.6e-33 PF00653.12.ls 1/3 77 142 .. 1 75 [] 119.4 9.4e-33 PF00653.12.ls 2/3 215 279 .. 1 75 [] 130.1 5.9e-36 PF00653.12.fs 2/3 215 279 .. 1 75 [] 128.2 5.1e-36 PF00653.12.ls 3/3 300 365 .. 1 75 [] 135.7 1.2e-37 PF00653.12.fs 3/3 300 365 .. 1 75 [] 133.8 1.3e-37 PF00619.12.fs 1/1 486 570 .. 1 89 [] 104.1 3.3e-28 PF00619.12.ls 1/1 486 570 .. 1 89 [] 106.0 1e-28 PF00097.15.fs 1/1 599 633 .. 1 50 [] 20.7 6.3e-07 PF00097.15.ls 1/1 599 633 .. 1 50 [] 22.3 0.00072 Alignments of top-scoring domains: PF00653.12.fs: domain 1 of 3, from 77 to 142: score 117.5, E = 5.6e-33 *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyytgvgDevDsArCffC R++T+++ +P +++s + LA+AGFyytgv D+v +Cf+C fk02065 77 RMSTYST--FPAGVPVS----ERSLARAGFYYTGVNDKV---KCFCC 114 gveLknWepgDdPweeHkrwsPnCpFvl<-* g+ L+nW+ gD P+++Hk+ +P+C F++ fk02065 115 GLMLDNWKLGDSPIQKHKQLYPSCSFIQ 142 PF00653.12.ls: domain 1 of 3, from 77 to 142: score 119.4, E = 9.4e-33 *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyytgvgDevDsArCffC R++T+++ +P +++s + LA+AGFyytgv D+v +Cf+C fk02065 77 RMSTYST--FPAGVPVS----ERSLARAGFYYTGVNDKV---KCFCC 114 gveLknWepgDdPweeHkrwsPnCpFvl<-* g+ L+nW+ gD P+++Hk+ +P+C F++ fk02065 115 GLMLDNWKLGDSPIQKHKQLYPSCSFIQ 142 PF00653.12.ls: domain 2 of 3, from 215 to 279: score 130.1, E = 5.9e-36 *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyytgvgDevDsArCffC R+ T++ WP+ +l p++LA+AGFyy g+gD+v Cf C fk02065 215 RFLTYHM--WPLTFLS-----PSELARAGFYYIGPGDRV---ACFAC 251 gveLknWepgDdPweeHkrwsPnCpFvl<-* g++L nWep Dd+++eH+r++PnCpF++ fk02065 252 GGKLSNWEPKDDAMSEHRRHFPNCPFLE 279 PF00653.12.fs: domain 2 of 3, from 215 to 279: score 128.2, E = 5.1e-36 *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyytgvgDevDsArCffC R+ T++ WP+ +l p++LA+AGFyy g+gD+v Cf C fk02065 215 RFLTYHM--WPLTFLS-----PSELARAGFYYIGPGDRV---ACFAC 251 gveLknWepgDdPweeHkrwsPnCpFvl<-* g++L nWep Dd+++eH+r++PnCpF++ fk02065 252 GGKLSNWEPKDDAMSEHRRHFPNCPFLE 279 PF00653.12.ls: domain 3 of 3, from 300 to 365: score 135.7, E = 1.2e-37 *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyytgvgDevDsArCffC R++TF WP s+++ peqLA AGFyy+g+ D v +Cf+C fk02065 300 RMRTFMY--WPSSVPVQ----PEQLASAGFYYVGRNDDV---KCFCC 337 gveLknWepgDdPweeHkrwsPnCpFvl<-* +++L++We+gDdPw eH++w+P+C+F+ fk02065 338 DGGLRCWESGDDPWVEHAKWFPRCEFLI 365 PF00653.12.fs: domain 3 of 3, from 300 to 365: score 133.8, E = 1.3e-37 *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyytgvgDevDsArCffC R++TF WP s+++ peqLA AGFyy+g+ D v +Cf+C fk02065 300 RMRTFMY--WPSSVPVQ----PEQLASAGFYYVGRNDDV---KCFCC 337 gveLknWepgDdPweeHkrwsPnCpFvl<-* +++L++We+gDdPw eH++w+P+C+F+ fk02065 338 DGGLRCWESGDDPWVEHAKWFPRCEFLI 365 PF00619.12.fs: domain 1 of 1, from 486 to 570: score 104.1, E = 3.3e-28 *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt ++l+rknR+aL+++l+ ++ ++LD+Ll +nV++ +e+++Ik+ +t+ fk02065 486 LSLIRKNRMALFQQLT--CVLPILDNLLKANVINKQEHDIIKQ-KTQ 529 rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-* + +areL+d+++ kG++a++iF ++L+e ++ L++ l+ + fk02065 530 IPLQARELIDTILVKGNAAANIFKNCLKE-IDSTLYKNLFVD 570 PF00619.12.ls: domain 1 of 1, from 486 to 570: score 106.0, E = 1e-28 *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt ++l+rknR+aL+++l+ ++ ++LD+Ll +nV++ +e+++Ik+ +t+ fk02065 486 LSLIRKNRMALFQQLT--CVLPILDNLLKANVINKQEHDIIKQ-KTQ 529 rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-* + +areL+d+++ kG++a++iF ++L+e ++ L++ l+ + fk02065 530 IPLQARELIDTILVKGNAAANIFKNCLKE-IDSTLYKNLFVD 570 PF00097.15.fs: domain 1 of 1, from 599 to 633: score 20.7, E = 6.3e-07 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC C +C++ + + ++pCgH ++C++C + + C fk02065 599 CKVCMDKEVSVV-----FIPCGHL----VVCQECAPSLRK------C 630 plC<-* p+C fk02065 631 PIC 633 PF00097.15.ls: domain 1 of 1, from 599 to 633: score 22.3, E = 0.00072 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC C +C++ + + ++pCgH ++C++C + + C fk02065 599 CKVCMDKEVSVV-----FIPCGHL----VVCQECAPSLRK------C 630 plC<-* p+C fk02065 631 PIC 633 //