hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23474579/chunk_1/iprscan-20080810-23474579.nocrc
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Query sequence: fk02065
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00238                                                 398.5   3.8e-115   3
SM00114                                                  97.9    1.2e-24   1
SM00184                                                  34.9    1.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00238    1/3      72   143 ..     1    81 []   123.2    3e-32
SM00238    2/3     210   280 ..     1    81 []   138.5  6.9e-37
SM00238    3/3     295   366 ..     1    81 []   136.8  2.3e-36
SM00114    1/1     481   569 ..     1    96 []    97.9  1.2e-24
SM00184    1/1     599   633 ..     1    23 []    34.9  1.1e-05

Alignments of top-scoring domains:
SM00238: domain 1 of 3, from 72 to 143: score 123.2, E = 3e-32
                   *->aseeaRlkTFqdnWPyskrnskltpeqLAkAGFyYtgiseeeagDeV
                      ++e +R++T+  ++P   ++++++ ++LA+AGFyYtg+     +D+V
     fk02065    72    SCELYRMSTYS-TFP---AGVPVSERSLARAGFYYTGV-----NDKV 109  

                   kCffCggeLknWepgDdPweeHkkwsPnCpFvrn<-*
                   kCf+Cg++L+nW+ gD+P+++Hk  +P+C F++n   
     fk02065   110 KCFCCGLMLDNWKLGDSPIQKHKQLYPSCSFIQN    143  

SM00238: domain 2 of 3, from 210 to 280: score 138.5, E = 6.9e-37
                   *->aseeaRlkTFqdnWPyskrnskltpeqLAkAGFyYtgiseeeagDeV
                      ++eeaR+ T++  WP    + +l+p++LA+AGFyY+g      gD+V
     fk02065   210    STEEARFLTYH-MWP----LTFLSPSELARAGFYYIGP-----GDRV 246  

                   kCffCggeLknWepgDdPweeHkkwsPnCpFvrn<-*
                   +Cf Cgg+L nWep+Dd+++eH++++PnCpF++n   
     fk02065   247 ACFACGGKLSNWEPKDDAMSEHRRHFPNCPFLEN    280  

SM00238: domain 3 of 3, from 295 to 366: score 136.8, E = 2.3e-36
                   *->aseeaRlkTFqdnWPyskrnskltpeqLAkAGFyYtgiseeeagDeV
                      ++++aR++TF  +WP+    +++ peqLA AGFyY g+     +D V
     fk02065   295    QTHAARMRTFM-YWPS---SVPVQPEQLASAGFYYVGR-----NDDV 332  

                   kCffCggeLknWepgDdPweeHkkwsPnCpFvrn<-*
                   kCf+C+g+L++We gDdPw eH+kw+P+C+F+ +   
     fk02065   333 KCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIR    366  

SM00114: domain 1 of 1, from 481 to 569: score 97.9, E = 1.2e-24
                   *->MeerdkrllrrnrvrlveelgvdiLdelLdyLveknvltekeeEaIk
                      M+++d++l+r+nr++l+++l+++   ++Ld+L+++nv++ +e++ Ik
     fk02065   481    MASDDLSLIRKNRMALFQQLTCVL--PILDNLLKANVINKQEHDIIK 525  

                   aattklrdDkarelvdslqkrGsqafdtfldsLqeFPtnqekLadvLel<
                   ++t+   +  arel+d++ ++G++a+++f ++L e   ++++L++ L++ 
     fk02065   526 QKTQIPLQ--ARELIDTILVKGNAAANIFKNCLKE---IDSTLYKNLFV  569  

                   -*
                     
     fk02065     -    -    

SM00184: domain 1 of 1, from 599 to 633: score 34.9, E = 1.1e-05
                   *->CpICle....pvvlpCgH..FCr.Ci.....CPlC<-*
                      C +C++++ ++v++pCgH   C++C ++ ++CP+C   
     fk02065   599    CKVCMDkevsVVFIPCGHlvVCQeCApslrkCPIC    633  

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