hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-11083741/chunk_1/iprscan-20090618-11083741.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk02085 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00488.12.fs MutS domain V 546.6 6.8e-165 1 PF00488.12.ls MutS domain V 548.6 5.8e-162 1 PF05192.9.ls MutS domain III 304.0 2.5e-88 1 PF05192.9.fs MutS domain III 302.1 9.7e-88 1 PF05188.8.fs MutS domain II 126.1 9e-36 1 PF05188.8.ls MutS domain II 128.1 2.3e-35 1 PF05190.8.ls MutS family domain IV 109.5 8.9e-30 1 PF05190.8.fs MutS family domain IV 107.5 1.2e-29 1 PF01624.10.fs MutS domain I 104.2 4.9e-29 1 PF01624.10.ls MutS domain I 106.1 9.3e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01624.10.fs 1/1 21 136 .. 1 121 [] 104.2 4.9e-29 PF01624.10.ls 1/1 21 136 .. 1 121 [] 106.1 9.3e-29 PF05188.8.ls 1/1 147 294 .. 1 157 [] 128.1 2.3e-35 PF05188.8.fs 1/1 147 294 .. 1 157 [] 126.1 9e-36 PF05192.9.fs 1/1 301 618 .. 1 230 [] 302.1 9.7e-88 PF05192.9.ls 1/1 301 618 .. 1 230 [] 304.0 2.5e-88 PF05190.8.fs 1/1 477 573 .. 1 102 [] 107.5 1.2e-29 PF05190.8.ls 1/1 477 573 .. 1 102 [] 109.5 8.9e-30 PF00488.12.fs 1/1 623 858 .. 1 245 [] 546.6 6.8e-165 PF00488.12.ls 1/1 623 858 .. 1 245 [] 548.6 5.8e-162 Alignments of top-scoring domains: PF01624.10.fs: domain 1 of 1, from 21 to 136: score 104.2, E = 4.9e-29 *->TPmmqQYleiKsqypDavLfFrmGDFYElFfeDAeiaareLgitLTk ++ +++ ++++++ +v++F++GDFY++++eDA++aare+ +t + fk02085 21 VGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGV 67 Rg.LggggkpnipmaGvPyhafetYlrrLvnk.GYKVAicEQvEdpaeae ++ +g +g++n++++ ++++fe+++++L++ ++Y+V++++ +++ fk02085 68 IKyMGPAGAKNLQSVVLSKMNFESFVKDLLLVrQYRVEVYKNRAGNKAS- 116 aRgdKGkvvkReVvrviTPGTltdee<-* K ++ ++ ++PG+l ++e fk02085 117 ----K--ENDWYLAYKASPGNLSQFE 136 PF01624.10.ls: domain 1 of 1, from 21 to 136: score 106.1, E = 9.3e-29 *->TPmmqQYleiKsqypDavLfFrmGDFYElFfeDAeiaareLgitLTk ++ +++ ++++++ +v++F++GDFY++++eDA++aare+ +t + fk02085 21 VGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGV 67 Rg.LggggkpnipmaGvPyhafetYlrrLvnk.GYKVAicEQvEdpaeae ++ +g +g++n++++ ++++fe+++++L++ ++Y+V++++ +++ fk02085 68 IKyMGPAGAKNLQSVVLSKMNFESFVKDLLLVrQYRVEVYKNRAGNKAS- 116 aRgdKGkvvkReVvrviTPGTltdee<-* K ++ ++ ++PG+l ++e fk02085 117 ----K--ENDWYLAYKASPGNLSQFE 136 PF05188.8.ls: domain 1 of 1, from 147 to 294: score 128.1, E = 2.3e-35 *->NylaAlkiskkdkgdgnr.yGlaflDlstGefgvsefeDddafeeLl + +++ + ++ dg+r++G+ ++D +++g++ef+D+d+f++L+ fk02085 147 ASIGVVGVKM-SAVDGQRqVGVGYVDSIQRKLGLCEFPDNDQFSNLE 192 aeLsrlsPkElLlpeslsesevielvaineeesqkllelrdrvgrrptwe a+L++++PkE++lp + + ++ ++ q++++ ++ +++r+ ++ fk02085 193 ALLIQIGPKECVLPGGETAGDM-------GKLRQIIQRGGILITERKKAD 235 felesaeedlledfgvedldgfGlkllpeeelplalcAagaLlsYlketq f ++ ++dl+++++++ + +++++lpe+e+++a+++++a+++ l++++ fk02085 236 FSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLS 285 krDsrnlphlq<-* ++ +n+++++ fk02085 286 DD--SNFGQFE 294 PF05188.8.fs: domain 1 of 1, from 147 to 294: score 126.1, E = 9e-36 *->NylaAlkiskkdkgdgnr.yGlaflDlstGefgvsefeDddafeeLl + +++ + ++ dg+r++G+ ++D +++g++ef+D+d+f++L+ fk02085 147 ASIGVVGVKM-SAVDGQRqVGVGYVDSIQRKLGLCEFPDNDQFSNLE 192 aeLsrlsPkElLlpeslsesevielvaineeesqkllelrdrvgrrptwe a+L++++PkE++lp + + ++ ++ q++++ ++ +++r+ ++ fk02085 193 ALLIQIGPKECVLPGGETAGDM-------GKLRQIIQRGGILITERKKAD 235 felesaeedlledfgvedldgfGlkllpeeelplalcAagaLlsYlketq f ++ ++dl+++++++ + +++++lpe+e+++a+++++a+++ l++++ fk02085 236 FSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLS 285 krDsrnlphlq<-* ++ +n+++++ fk02085 286 DD--SNFGQFE 294 PF05192.9.fs: domain 1 of 1, from 301 to 618: score 302.1, E = 9.7e-88 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->edymllDsaTrrNLELvenlsrDggkkgSLlsvLDrTvTaMGsRLLr ++ym+lD+a++r+L+L++ +D ++ +SL+++L++++T++G+RL + fk02085 301 SQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVN 347 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx rWLlqPLrDreeInaRldaVeelledpelreeLr.elLkrvyDlERLlsR +W++qPL+D+++I++Rl+ Ve+++ed+elr++L+++lL+r++Dl RL+++ fk02085 348 QWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQeDLLRRFPDLNRLAKK 397 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lalgrAnprDLlrLrdsLerlplLktikelleeldsplsnlsslLkellk ++++ An++D++rL++++++lp ++ ++le++++++++l +++++ fk02085 398 FQRQAANLQDCYRLYQGINQLP---NVIQALEKHEGKHQKLLLAVFVTPL 444 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kldrddlselldlLekaIneDPwasalPleireGglIks........... + +r+d+s++ +++e+++++D ++e++e l+k++ +++ ++ ++ fk02085 445 TDLRSDFSKFQEMIETTLDMD------QVENHE-FLVKPsfdpnlselre 487 RF .................................................. ++ +++ +++ + ++ + +++++ + +++ + + + + ++++ fk02085 488 imndlekkmqstlisaardlgldpgkqikldssaqfgyyfrvtckeekvl 537 RF xxxxxxxxxxxxxx ....................................alalEkelfeelre +++++ ++ + ++++ + ++++ ++ +++ +++++++++ + ++++e+++ fk02085 538 rnnknfstvdiqkngvkftnskltslneeytknkteYEEAQDAIVKEIVN 587 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rvvehaepLqalAeaLAeLDvlvSLAelAee<-* ++ ep+q+l+++LA+LD++vS+A+++ fk02085 588 ISSGYVEPMQTLNDVLAQLDAVVSFAHVSNG 618 PF05192.9.ls: domain 1 of 1, from 301 to 618: score 304.0, E = 2.5e-88 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->edymllDsaTrrNLELvenlsrDggkkgSLlsvLDrTvTaMGsRLLr ++ym+lD+a++r+L+L++ +D ++ +SL+++L++++T++G+RL + fk02085 301 SQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVN 347 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx rWLlqPLrDreeInaRldaVeelledpelreeLr.elLkrvyDlERLlsR +W++qPL+D+++I++Rl+ Ve+++ed+elr++L+++lL+r++Dl RL+++ fk02085 348 QWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQeDLLRRFPDLNRLAKK 397 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lalgrAnprDLlrLrdsLerlplLktikelleeldsplsnlsslLkellk ++++ An++D++rL++++++lp ++ ++le++++++++l +++++ fk02085 398 FQRQAANLQDCYRLYQGINQLP---NVIQALEKHEGKHQKLLLAVFVTPL 444 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kldrddlselldlLekaIneDPwasalPleireGglIks........... + +r+d+s++ +++e+++++D ++e++e l+k++ +++ ++ ++ fk02085 445 TDLRSDFSKFQEMIETTLDMD------QVENHE-FLVKPsfdpnlselre 487 RF .................................................. ++ +++ +++ + ++ + +++++ + +++ + + + + ++++ fk02085 488 imndlekkmqstlisaardlgldpgkqikldssaqfgyyfrvtckeekvl 537 RF xxxxxxxxxxxxxx ....................................alalEkelfeelre +++++ ++ + ++++ + ++++ ++ +++ +++++++++ + ++++e+++ fk02085 538 rnnknfstvdiqkngvkftnskltslneeytknkteYEEAQDAIVKEIVN 587 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rvvehaepLqalAeaLAeLDvlvSLAelAee<-* ++ ep+q+l+++LA+LD++vS+A+++ fk02085 588 ISSGYVEPMQTLNDVLAQLDAVVSFAHVSNG 618 PF05190.8.fs: domain 1 of 1, from 477 to 573: score 107.5, E = 1.2e-29 *->gfdeeLDelrdlleeleeelaeleakererlgidpkksLkvgynkvl fd++L elr+++++le+ + + + + + +lg+dp k++k+++++++ fk02085 477 SFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQF 523 GYyievtrseakkvRrlPkGnnsdyirrqtlKnseRFtTpeLkeledell GYy++vt++e+k +R nn+++ +++ +Kn+++Ft+ +L++l++e+ fk02085 524 GYYFRVTCKEEKVLR-----NNKNFSTVDIQKNGVKFTNSKLTSLNEEYT 568 eaeee<-* + ++e fk02085 569 KNKTE 573 PF05190.8.ls: domain 1 of 1, from 477 to 573: score 109.5, E = 8.9e-30 *->gfdeeLDelrdlleeleeelaeleakererlgidpkksLkvgynkvl fd++L elr+++++le+ + + + + + +lg+dp k++k+++++++ fk02085 477 SFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQF 523 GYyievtrseakkvRrlPkGnnsdyirrqtlKnseRFtTpeLkeledell GYy++vt++e+k +R nn+++ +++ +Kn+++Ft+ +L++l++e+ fk02085 524 GYYFRVTCKEEKVLR-----NNKNFSTVDIQKNGVKFTNSKLTSLNEEYT 568 eaeee<-* + ++e fk02085 569 KNKTE 573 PF00488.12.fs: domain 1 of 1, from 623 to 858: score 546.6, E = 6.8e-165 *->YvRPeftesdaegelhIegGRHPVVEavlkrdagnFVpNDvdlsker YvRP + e+ ++g+++++++RH +VE + d++ F+pNDv+++k++ fk02085 623 YVRPAILEK-GQGRIILKASRHACVEVQ---DEIAFIPNDVYFEKDK 665 lhsrillITGPNMgGKSTYlRQvALIvlMAQiGSFVPAesAeIgivDrIF +++++ITGPNMgGKSTY+RQ+++IvlMAQiG+FVP+esAe +ivD+I fk02085 666 --QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCIL 713 TRIGAsDdLakGrSTFMVEMlETAnILhnATdkSLVilDElGRGTSTyDG +R+GA+D++ kG+STFM EMlETA+IL+ AT++SL+i+DElGRGTSTyDG fk02085 714 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDG 763 laIAwAvaEyLaekirArTLFATHYhELTkLaeklpaVklyNvHmaavie +++AwA++Ey+a+ki+A+++FATH+hELT+La+++p+V N+H++a+ fk02085 764 FGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVN--NLHVTAL-T 810 tdgdivFLykvkpGaadkSYGIhVAelAGLPesVverArevLaeLEer<- t++++++Ly+vk+G++d+S+GIhVAelA++P++V+e+A++++ eLEe+ fk02085 811 TEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEF 858 * fk02085 - - PF00488.12.ls: domain 1 of 1, from 623 to 858: score 548.6, E = 5.8e-162 *->YvRPeftesdaegelhIegGRHPVVEavlkrdagnFVpNDvdlsker YvRP + e+ ++g+++++++RH +VE + d++ F+pNDv+++k++ fk02085 623 YVRPAILEK-GQGRIILKASRHACVEVQ---DEIAFIPNDVYFEKDK 665 lhsrillITGPNMgGKSTYlRQvALIvlMAQiGSFVPAesAeIgivDrIF +++++ITGPNMgGKSTY+RQ+++IvlMAQiG+FVP+esAe +ivD+I fk02085 666 --QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCIL 713 TRIGAsDdLakGrSTFMVEMlETAnILhnATdkSLVilDElGRGTSTyDG +R+GA+D++ kG+STFM EMlETA+IL+ AT++SL+i+DElGRGTSTyDG fk02085 714 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDG 763 laIAwAvaEyLaekirArTLFATHYhELTkLaeklpaVklyNvHmaavie +++AwA++Ey+a+ki+A+++FATH+hELT+La+++p+V N+H++a+ fk02085 764 FGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVN--NLHVTAL-T 810 tdgdivFLykvkpGaadkSYGIhVAelAGLPesVverArevLaeLEer<- t++++++Ly+vk+G++d+S+GIhVAelA++P++V+e+A++++ eLEe+ fk02085 811 TEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEF 858 * fk02085 - - //