hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23534432/chunk_1/iprscan-20080810-23534432.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk02264
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
TIGR01522      ATPase-IIA2_Ca: calcium-transporting P  1259.7          0   1
TIGR01494      ATPase_P-type: ATPase, P-type (transpo   254.1    9.3e-74   3

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
TIGR01494        1/3       1    75 [.   163   234 ..    81.8  7.1e-22
TIGR01522        1/1       2   611 ..     1   856 []  1259.7        0
TIGR01494        2/3     218   295 ..   294   366 ..    64.8    3e-17
TIGR01494        3/3     322   443 ..   363   478 .]   107.5  1.2e-29

Alignments of top-scoring domains:
TIGR01494: domain 1 of 3, from 1 to 75: score 81.8, E = 7.1e-22
                   *->kiflralillviaiPiaLpvavtialavgdkrma...ilvrslnalE
                      + +++  +l+v+aiP++Lp++vt++la+g  rm +++++v++l+++E
     fk02264     1    YFVYVGYSLAVAAIPEGLPIVVTVTLALGVMRMVkkrAIVKKLPIVE 47   

                   elGqvdyicsDKTGTLTenkmtfkkvyi<-*
                   +lG++++icsDKTGTLT+n+mt+ ++ +   
     fk02264    48 TLGCCNVICSDKTGTLTKNEMTVTHIFT    75   

TIGR01522: domain 1 of 1, from 2 to 611: score 1259.7, E = 0
                   *->SvqYcelsVeEtcskLqTDlenGLsSsqEashRRklHGsNefkvEed
                                                                     
     fk02264     -    ----------------------------------------------- -    

                   EsLvKKFlsQFvkdPLILLLiaSAvvSvfMGNiDDAvSITLAIlIVVTVG
                             F                                       
     fk02264     2 ----------F--------------------------------------- 2    

                   FVQEYRSEKSLEALNKLVPpECHliRaGkeeHvLAStLVPGDLVilsvGD
                                                                     
     fk02264     - -------------------------------------------------- -    

                   RvPADlRIvEAvdLSIDESNLTGEttPvkKssepieaLaeRsNIAfMGTL
                                                                     
     fk02264     - -------------------------------------------------- -    

                   VReGhGkGIVVGTGsnTeFGaVFkMmqeiEkPKTPLQkSMDkLGKdLSLv
                                        V+                           
     fk02264     3 ---------------------VY--------------------------- 4    

                   SFivIGvIcLVGifQGkdWLEMFTIsVSLAVAAIPEGLPIIVTVTLALGV
                                           ++ SLAVAAIPEGLPI+VTVTLALGV
     fk02264     5 ------------------------VGYSLAVAAIPEGLPIVVTVTLALGV 30   

                   LRMsKkrAIVRkLPSVETLGSVNVICSDKTGTLTkNHMTVTkiwTvD...
                   +RM+KkrAIV+kLP+VETLG++NVICSDKTGTLTkN+MTVT+i+T+D+ +
     fk02264    31 MRMVKKRAIVKKLPIVETLGCCNVICSDKTGTLTKNEMTVTHIFTSDglh 80   

                   .elnavsLd................tvavekiLeaGnLCNNakfrneadt
                    e+++v++++ ++   +++  ++  ++av++i+eaG++CN+a++rn+  t
     fk02264    81 aEVTGVGYNqfgevivdgdvvhgfyNPAVSRIVEAGCVCNDAVIRNN--T 128  

                   llGnPTDvALIEllekFGLeDlReTykRvaEvPFSSeRKwMavkvvt...
                   l+G+PT++ALI+l++k+GL++l+++y+R+aE+PFSSe+KwMavk+v++++
     fk02264   129 LMGKPTEGALIALAMKMGLDGLQQDYIRKAEYPFSSEQKWMAVKCVHrtq 178  

                   .dskemvfvKGAyEqvlkyCtyYlkkdGkKTeeLTeeqkekiqeeaaeMa
                   +d++e++f+KGAyEqv+kyCt+Y++k G+ T++LT++q++++q+e+a+M+
     fk02264   179 qDRPEICFMKGAYEQVIKYCTTYQSK-GQ-TLTLTQQQRDVYQQEKARMG 226  

                   seGLRviAfAsgtekd.LvFlGLvGinDPPRPdVkeAverLltGGVrviM
                   s+GLRv+A+Asg+e+++L+FlGLvGi+DPPR++VkeAv++L+++GV+++M
     fk02264   227 SAGLRVLALASGPELGqLTFLGLVGIIDPPRTGVKEAVTTLIASGVSIKM 276  

                   ITGDSeeTAvsIArrlGmpvkssk..eGekLDeMddqqLsevvdkVavFA
                   ITGDS+eTAv+IA+rlG+++k+s++ +Ge++D+Md+qqLs++v+kVavF+
     fk02264   277 ITGDSQETAVAIASRLGLYSKTSQsvSGEEIDAMDVQQLSQIVPKVAVFY 326  

                   RasPeHKMKIVkaLQkrGDVVAMTGDGVNDAPALKLADIGvAMGrtGTDV
                   RasP+HKMKI+k+LQk+G+VVAMTGDGVNDA+ALK+ADIGvAMG+tGTDV
     fk02264   327 RASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDV 376  

                   AKEAADMILTDDDFaTILSAIEEGKGIFNNIkNFiTFQLSTSvAALSLvA
                   +KEAADMIL+DDDF+TI+SAIEEGKGI+NNIkNF++FQLSTS+AAL+L++
     fk02264   377 CKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLIS 426  

                   laTvfglpNPLNAMQILWINILMDGPPAQSLGVEPVDkDVmkKPPRpRnd
                   laT++++pNPLNAMQILWINI+MDGPPAQSLGVEPVDkDV++KPPR+++d
     fk02264   427 LATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKD 476  

                   kIlTkdLlkkvLvsAvIIvvGTllVFvkeMqEDGvvTaRDTTMTFTCFVF
                   +IlTk+L++k+Lvs++IIv+GTl+VF++e++ D+v+T+RDTTMTFTCFVF
     fk02264   477 SILTKNLILKILVSSIIIVCGTLFVFWRELR-DNVITPRDTTMTFTCFVF 525  

                   FDMFNALACRSeTKSVFEIGfFSNrMFnYAVGgSliGQllVvYvPplQsv
                   FDMFNAL++RS+TKSVFEIG++SNrMF+YAV+gS++GQllV+Y+PplQ+v
     fk02264   526 FDMFNALSSRSQTKSVFEIGLCSNRMFCYAVLGSIMGQLLVIYFPPLQKV 575  

                   FQTEaLsikDlLlLLlitSSVlIVDEirKlyeRske<-*
                   FQTE+Lsi+DlL+LL++tSSV+IV+Ei+K++eRs+e   
     fk02264   576 FQTESLSILDLLFLLGLTSSVCIVAEIIKKVERSRE    611  

TIGR01494: domain 2 of 3, from 218 to 295: score 64.8, E = 3e-17
                   *->teehleelaseGlRtLavAykee.....llGltaieDpLredvketI
                      ++++ + ++s GlR+La+A+ +e ++ ++lGl++i Dp+r +vke++
     fk02264   218    YQQEKARMGSAGLRVLALASGPElgqltFLGLVGIIDPPRTGVKEAV 264  

                   eeLkraGikvwMlTGDnveTAiaIAkecglf<-*
                    +L ++G+ ++M+TGD +eTA+aIA ++gl+   
     fk02264   265 TTLIASGVSIKMITGDSQETAVAIASRLGLY    295  

TIGR01494: domain 3 of 3, from 322 to 443: score 107.5, E = 1.2e-29
                   *->cglfARvsPeqKaeiVellqkrgaiVamiGDGaNDapALkaADVGia
                      + +f R sP +K  i++ lqk+g +Vam+GDG+NDa ALkaAD+G+a
     fk02264   322    VAVFYRASPRHKMKIIKSLQKNGSVVAMTGDGVNDAVALKAADIGVA 368  

                   ig......AkaaaDivltddnlslivlllvhGRwtykrikklilyalyyn
                   +g+++++  k+aaD++l dd++ +i  ++++G+ +y++ik ++ ++l+ +
     fk02264   369 MGqtgtdvCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTS 418  

                   liliillfvlsvinllftslpalal<-*
                   +++  l++++ ++n  ++ +++ +l   
     fk02264   419 IAALTLISLATLMNFPNPLNAMQIL    443  

//