hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23593202/chunk_1/iprscan-20080810-23593202.nocrc
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Query sequence: fk02333
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF01434.8.ls  Peptidase family M41                      408.6   8.5e-120   1
PF01434.8.fs  Peptidase family M41                      406.6   3.2e-119   1
PF00004.19.fs ATPase family associated with various c   306.9    1.6e-92   1
PF00004.19.ls ATPase family associated with various c   308.8    9.2e-90   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00004.19.fs   1/1     355   540 ..     1   215 []   306.9  1.6e-92
PF00004.19.ls   1/1     355   540 ..     1   215 []   308.8  9.2e-90
PF01434.8.fs    1/1     547   745 ..     1   216 []   406.6 3.2e-119
PF01434.8.ls    1/1     547   745 ..     1   216 []   408.6 8.5e-120

Alignments of top-scoring domains:
PF00004.19.fs: domain 1 of 1, from 355 to 540: score 306.9, E = 1.6e-92
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv
                      g+LL+GPPGtGKTllA+avA+e+++pf+  sgse+ +++vG++++r+
     fk02333   355    GILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI 401  

                   ralfelArkslkaaPspiiFIDEiDalapkRgd..egdvssrvvnqLlte
                   r+lf++A+ +   aP+ +iFIDE+D++++kR ++++++ s++++nqLl+e
     fk02333   402 RNLFREAKAN---APC-VIFIDELDSVGGKRIEspMHPYSRQTINQLLAE 447  

                   mDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrri
                   mD    gf++          ++gvi+i+aTN p+ lD+AL+rpGRfd ++
     fk02333   448 MD----GFKP----------NEGVIIIGATNFPEALDNALIRPGRFDMQV 483  

                   evplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrtp
                    vp Pd+++R eIlk +l+k++++          +vd +     +Ar t+
     fk02333   484 TVPRPDVKGRTEILKWYLNKIKFD---------QSVDPEI----IARGTV 520  

                   gfsgadlaalcreAalralr<-*
                   gfsga+l++l+++Aal+a+    
     fk02333   521 GFSGAELENLVNQAALKAAV    540  

PF00004.19.ls: domain 1 of 1, from 355 to 540: score 308.8, E = 9.2e-90
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv
                      g+LL+GPPGtGKTllA+avA+e+++pf+  sgse+ +++vG++++r+
     fk02333   355    GILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI 401  

                   ralfelArkslkaaPspiiFIDEiDalapkRgd..egdvssrvvnqLlte
                   r+lf++A+ +   aP+ +iFIDE+D++++kR ++++++ s++++nqLl+e
     fk02333   402 RNLFREAKAN---APC-VIFIDELDSVGGKRIEspMHPYSRQTINQLLAE 447  

                   mDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrri
                   mD    gf++          ++gvi+i+aTN p+ lD+AL+rpGRfd ++
     fk02333   448 MD----GFKP----------NEGVIIIGATNFPEALDNALIRPGRFDMQV 483  

                   evplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrtp
                    vp Pd+++R eIlk +l+k++++          +vd +     +Ar t+
     fk02333   484 TVPRPDVKGRTEILKWYLNKIKFD---------QSVDPEI----IARGTV 520  

                   gfsgadlaalcreAalralr<-*
                   gfsga+l++l+++Aal+a+    
     fk02333   521 GFSGAELENLVNQAALKAAV    540  

PF01434.8.fs: domain 1 of 1, from 547 to 745: score 406.6, E = 3.2e-119
                   *->tmaeleeAiDRviaGpEkKssrvisekeKrlvAYHEaGHALvGlllp
                      tm+ele+++D++++GpE++ s +i+ k+K+++AYHE+GHA+++++++
     fk02333   547    TMKELEFSKDKILMGPERR-SVEIDNKNKTITAYHESGHAIIAYYTK 592  

                   gadpVhKVTIIPRGqaALGyTlflPeeDkllyLytksqLlaridvlLGGR
                   +a+p++K+TI+PRG  +LG+++ lPe D+++   t++qLla++dv +GGR
     fk02333   593 DAMPINKATIMPRGP-TLGHVSLLPENDRWN--ETRAQLLAQMDVSMGGR 639  

                   AAEEliFGddeVTTGAsnDLeqATkiARqMVTefGMSdklGpvaledsdg
                   +AEEliFG+d++TTGAs+D++ ATkiA++MVT+fGMS+klG + + d + 
     fk02333   640 VAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGK 689  

                   gqvFlGrgmgrkeySeeTadeIDeEVrrlleeaYerAkeiLtenrdeLda
                                +S+eT+ +I++E+r ll ++YerAk+iL+++ +e++ 
     fk02333   690 -------------LSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKN 726  

                   LAeaLLekETLdaeEirel<-*
                   LAeaLL +ETLda+Ei+ +   
     fk02333   727 LAEALLTYETLDAKEIQIV    745  

PF01434.8.ls: domain 1 of 1, from 547 to 745: score 408.6, E = 8.5e-120
                   *->tmaeleeAiDRviaGpEkKssrvisekeKrlvAYHEaGHALvGlllp
                      tm+ele+++D++++GpE++ s +i+ k+K+++AYHE+GHA+++++++
     fk02333   547    TMKELEFSKDKILMGPERR-SVEIDNKNKTITAYHESGHAIIAYYTK 592  

                   gadpVhKVTIIPRGqaALGyTlflPeeDkllyLytksqLlaridvlLGGR
                   +a+p++K+TI+PRG  +LG+++ lPe D+++   t++qLla++dv +GGR
     fk02333   593 DAMPINKATIMPRGP-TLGHVSLLPENDRWN--ETRAQLLAQMDVSMGGR 639  

                   AAEEliFGddeVTTGAsnDLeqATkiARqMVTefGMSdklGpvaledsdg
                   +AEEliFG+d++TTGAs+D++ ATkiA++MVT+fGMS+klG + + d + 
     fk02333   640 VAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGK 689  

                   gqvFlGrgmgrkeySeeTadeIDeEVrrlleeaYerAkeiLtenrdeLda
                                +S+eT+ +I++E+r ll ++YerAk+iL+++ +e++ 
     fk02333   690 -------------LSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKN 726  

                   LAeaLLekETLdaeEirel<-*
                   LAeaLL +ETLda+Ei+ +   
     fk02333   727 LAEALLTYETLDAKEIQIV    745  

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