hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23593202/chunk_1/iprscan-20080810-23593202.nocrc
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Query sequence: fk02333
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  90.4    2.1e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/1     352   489 ..     1    92 []    90.4  2.1e-22

Alignments of top-scoring domains:
SM00382: domain 1 of 1, from 352 to 489: score 90.4, E = 2.1e-22
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge.........gg
                       ++ +llvGppG+GKT lara+a++++ +++y +g++ ++   + g+
     fk02333   352    LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSefdemfvgvGA 398  

                   qrirlalalark...dvlllDEitslld......................
                    rir++++ a+++ ++v+++DE++s   ++ ++  +  +++  ++++ + 
     fk02333   399 SRIRNLFREAKAnapCVIFIDELDSVGGkriespmhpysrqtinqllaem 448  

                   ........vtviattn...dldpallrr.rfdrrivllril<-*
                   ++ + +++v++i++tn ++ ld al+r++rfd ++ ++r++   
     fk02333   449 dgfkpnegVIIIGATNfpeALDNALIRPgRFDMQVTVPRPD    489  

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