hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-23593202/chunk_1/iprscan-20080810-23593202.nocrc
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Query sequence: fk02333
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR01241 FtsH_fam: ATP-dependent metallopeptidase Hfl   720.0   5.4e-214   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR01241   1/1     269   747 ..     1   505 []   720.0 5.4e-214

Alignments of top-scoring domains:
TIGR01241: domain 1 of 1, from 269 to 747: score 720.0, E = 5.4e-214
                   *->sllgfLfsllPpiLlliglfflFrRqmqGglGGkgrgaFsFGKSkAk
                      + l+    +l+ +Lll+g++ l+ +   +  +   r   ++  +   
     fk02333   269    DSLRRTRLILF-VLLLFGIYGLLKNPFLSV-R--FRTTTGLDSAVDP 311  

                   llneekpkVtFkDVAGiDEAKEELvEiVdFLKnPsKFtkLGAKIPKGVLL
                   ++++   +VtF  V G++EAK+EL+E+V+FLKnP KFt LG+K PKG+LL
     fk02333   312 VQMK---NVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILL 358  

                   vGPPGTGKTLLAKAvAGEAgVPFFsISGSDFVEMFVGVGASRVRDLFeqA
                   vGPPGTGKTLLA+AvAGEA+VPF+  SGS+F EMFVGVGASR+R LF  A
     fk02333   359 VGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREA 408  

                   KknAPCIIFIDEIDAVGRqRGaGelGGGnDEREQTLNQLLVEMDGFgtnt
                   K nAPC IFIDE+D+VG +R      + ++   QT NQLL+EMDGF +n+
     fk02333   409 KANAPCVIFIDELDSVGGKRIES-PMHPYSR--QTINQLLAEMDGFKPNE 455  

                   GVIviAATNRPDVLDpALLRPGRFDRQvvVdlPDikGReeILkVHaknkk
                   GVI+i ATN P+ LD+AL RPGRFD Qv+V++PD+kGR eILk  + ++k
     fk02333   456 GVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIK 505  

                   LapdVdLkavArrTPGfSGADLANllNEAALLAARkNkteitmndieEAv
                    ++ Vd +++Ar+T+GfSGA+L+Nl+N AAL AA ++k+ +tm+++e  +
     fk02333   506 FDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSK 555  

                   DRViaGlekKSrviSekEKkivAYHEaGHAlvGlllkdaDpVhKVTIIPR
                   D++++G+e++S +i+ k K+i+AYHE+GHA++++++kda p++K TI PR
     fk02333   556 DKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPR 605  

                   GqgALGyTqfLPeegDkylytkkqLlakiavllGGRaAEEiiFGeeeVTT
                   G  +LG+   LPe  D+   t+ qLla+++v +GGR+AEE+iFG +++TT
     fk02333   606 GP-TLGHVSLLPEN-DRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITT 653  

                   GAsnDlkqATniARaMVTewGMSeklGpvaygqsdggevfLGrgfakake
                   GAs+D+  AT+iA++MVT++GMSeklG + y  + g              
     fk02333   654 GASSDFDNATKIAKRMVTKFGMSEKLGVMTYS-DTG-------------K 689  

                   ySeeTAreIDeEVkriieeaYkrAkqILtenrdeLellakeLlekETitr
                    S+eT+ +I +E++ ++ + Y+rAk IL+ + +e + la++Ll +ET+++
     fk02333   690 LSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDA 739  

                   eeikella<-*
                   +ei+ +l+   
     fk02333   740 KEIQIVLE    747  

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