hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-11214235/chunk_1/iprscan-20090618-11214235.nocrc
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Query sequence: fk02388
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00270.19.ls DEAD/DEAH box helicase                       261.4    1.7e-75   1
PF00270.19.fs DEAD/DEAH box helicase                       259.6    5.9e-75   1
PF00271.21.fs Helicase conserved C-terminal domain         120.1    1.8e-34   1
PF00271.21.ls Helicase conserved C-terminal domain         122.1    1.4e-33   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1     339   510 ..     1   213 []   259.6  5.9e-75
PF00270.19.ls   1/1     339   510 ..     1   213 []   261.4  1.7e-75
PF00271.21.fs   1/1     579   655 ..     1    76 []   120.1  1.8e-34
PF00271.21.ls   1/1     579   655 ..     1    76 []   122.1  1.4e-33

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 339 to 510: score 259.6, E = 5.9e-75
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      tpiQ + +p++l+GrD++++A+TGSGKT+af  P+l ++++++    
     fk02388   339    TPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDqK---- 381  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                       +++++dgp a++++PTreL++Qi+ e+k++gk         ++l+ 
     fk02388   382 ----ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKA--------YNLRS 419  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   +++yGG s++eq+++l  +  +g    + I+v+TPgrL+d++    k+ +
     fk02388   420 VAVYGGGSMWEQAKAL--Q--EG----AEIVVCTPGRLIDHV----KK-K 456  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
                   a  +l+++++lV+DEA+r++dm Gf++++++i ++++ p+          
     fk02388   457 A-TNLQRVSYLVFDEADRMFDM-GFEYQVRSIASHVR-PD---------- 493  

                RF xxxxxxxxxxxxxxxxx   
                   rqtllfSATlprnvedl<-*
                   rqtllfSAT+ +++e+l   
     fk02388   494 RQTLLFSATFRKKIEKL    510  

PF00270.19.ls: domain 1 of 1, from 339 to 510: score 261.4, E = 1.7e-75
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      tpiQ + +p++l+GrD++++A+TGSGKT+af  P+l ++++++    
     fk02388   339    TPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDqK---- 381  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                       +++++dgp a++++PTreL++Qi+ e+k++gk         ++l+ 
     fk02388   382 ----ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKA--------YNLRS 419  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   +++yGG s++eq+++l  +  +g    + I+v+TPgrL+d++    k+ +
     fk02388   420 VAVYGGGSMWEQAKAL--Q--EG----AEIVVCTPGRLIDHV----KK-K 456  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
                   a  +l+++++lV+DEA+r++dm Gf++++++i ++++ p+          
     fk02388   457 A-TNLQRVSYLVFDEADRMFDM-GFEYQVRSIASHVR-PD---------- 493  

                RF xxxxxxxxxxxxxxxxx   
                   rqtllfSATlprnvedl<-*
                   rqtllfSAT+ +++e+l   
     fk02388   494 RQTLLFSATFRKKIEKL    510  

PF00271.21.fs: domain 1 of 1, from 579 to 655: score 120.1, E = 1.8e-34
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                       l+++g++ + lhG+++q+eR +++ +F++ +++vLvaTdva+rG+D
     fk02388   579    NLkQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLD 625  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ip + +VInyd+ +++++  +RiGR+GRaG   
     fk02388   626 IPSIKTVINYDVARDIDTHTHRIGRTGRAG    655  

PF00271.21.ls: domain 1 of 1, from 579 to 655: score 122.1, E = 1.4e-33
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                       l+++g++ + lhG+++q+eR +++ +F++ +++vLvaTdva+rG+D
     fk02388   579    NLkQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLD 625  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ip + +VInyd+ +++++  +RiGR+GRaG   
     fk02388   626 IPSIKTVINYDVARDIDTHTHRIGRTGRAG    655  

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